Sphingomonas sanxanigenens: NX02_06665
Help
Entry
NX02_06665 CDS
T03929
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NX02_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssan03021
]
NX02_06665
03400 DNA repair and recombination proteins [BR:
ssan03400
]
NX02_06665
Enzymes [BR:
ssan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NX02_06665
Transcription machinery [BR:
ssan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NX02_06665
DNA repair and recombination proteins [BR:
ssan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NX02_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AHE53063
UniProt:
W0A9S9
LinkDB
All DBs
Position
1335525..1339778
Genome browser
AA seq
1417 aa
AA seq
DB search
MNELTNFANPIAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGLTALDKYQLLTEDELLNAQDEYGEDAFSAG
IGAEAVRIMLESLDLEGEREVLLKELAETKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMMKENEPGEGMLMSDMAEVHQALNA
KAVTLHTKVTTRVPQTDEDGKQYMKRVETTPGRMLLGETLPKSHKVPFETINRLLTKKEI
GDVIDIVYRHTGQKETVLFADAIMSLGFRHAFKAGISFGKDDMIIPAEKDGLVDETRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAAAMMKEIQAVKKGEDGRELPINAIYMM
AHSGARGSPAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCTVVELDCGTDRALEMKAIVQGGATIASLGERILGRTTA
EDIIDTKNGEVVIPEGTLLDEAMIAQIEAIGTQAVKIRSPLICETRMGVCAKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSNLEAVSDGTIELRDLPTI
TDSRGRRVALARNGELAIIDTEGRERAVHRIPYGAHLMFEDGAKVSKGDRMAEWDPFTMP
VITEKGGIVKFQDLIEGATLTEQTDEATGLTQRVVTENQSRNRKEDLRPRITLLDEGSGE
AARYMLAPGAMLSVEEGQNVHAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKENAI
IAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLIPKSKVIDVQEGDYVKRGDNLIGGSP
DPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITEAGDTTLL
PGEQVDWEEMTEINEKVIAEGRQPAVGKPILLGITKASLQTRSFISAASFQETTRVLTEA
AVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRLRVAASSKDAALRAQQRAWQASLIAPKS
AAEEHAAELRRPVQDDTGDDALAAVVADTNGEDGAEI
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgccaatccgatcgcgaagcccgaaaccttcgaccagatc
cagatcggcatcgccagcccggagcgtatccgcagctggtcgttcggtgagatcaagaag
cccgagacgatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcggatgaagtac
aagggcatcgtctgcgagaagtgcggcgtcgaggtgaccgtctcgaaggtccgccgcgag
cggatgggccatatcgagctcgccgccccggttgcgcacatctggttcctgaagtcgctg
ccgtcgcgtatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtac
ttcgaatcctacatcgtcatcgagccgggcctgaccgcgctcgacaagtatcagctcctc
accgaggatgagctgctcaacgcgcaggacgaatatggcgaggacgcgttcagcgccggc
atcggcgccgaggcggtccgcatcatgctcgaaagcctcgatctcgagggcgagcgcgag
gtgctgctcaaggagctggccgagaccaagtccgagctgaagcccaagaagatcatcaag
cggctcaaggtcgtcgagagcttcatcgattcgggcaaccgccccgaatggatgatcctc
gaggtgatcccggtcatcccgcccgagctgcgcccgctggtgccgctggacggcggccgc
ttcgcgacgtcggacctcaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctc
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagcggtcgacgcgctgttcgacaatggccgccgcggccgcacgatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgcttaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtgaccggcccg
gagctcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctcgacgccaagggtctctcgatgaccctcaagcaggcgaagaag
tgggtggagaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgagcac
ccggttctgctgaaccgcgcgccgacgctccaccgtctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctccgcgttcaacgcc
gacttcgacggcgaccagatggccgtccacgtgccgctgagcctcgaggcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgtgccgtcgcaggacatggtcctcggcctctattatctttcgatgatgaaggagaat
gagccgggcgagggcatgctgatgtccgacatggcggaggtgcaccaggcgctcaacgcc
aaggcggtgacgctgcacaccaaggtcacgacccgggtgccgcagaccgacgaggacggc
aagcagtacatgaagcgcgtcgagaccacgccgggccgcatgctgctgggcgagacgctg
ccgaagagccacaaggtgccgttcgagacgatcaaccgcctgctgaccaagaaggagatc
ggcgacgtcatcgacatcgtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacgcgatcatgtcgctgggcttccgccacgcgttcaaggccggcatcagcttcggcaag
gacgacatgatcatcccggccgagaaggacgggctggtcgacgagacccgcgcgctcgtg
aaggattatgagcagcagtatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccggtgcggcgaccaggtggctgccgcgatgatgaaggagatc
caggcggtcaagaagggtgaggacggccgcgaactgccgatcaacgccatctacatgatg
gcgcactcgggcgcccgtggttcgcctgcgcagatcaagcagcttgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtcctcgaatacttcaactcgacccacggcgcccgcaagggtctcgcggac
accgcgttgaagaccgcgaactcgggttacctgacccgtcgtctggtcgacgtgtcgcag
gattgcaccgtggtcgagctcgactgcggcaccgatcgtgcgctggagatgaaggcgatc
gtccagggcggcgccaccatcgcgtcgctgggcgagcgcatcctgggccgcaccacggcc
gaggacatcatcgacaccaagaatggcgaggtcgtcatccccgagggcacgctgctcgac
gaggcgatgatcgcgcagatcgaggcgatcggcacccaggcggtcaagatccgcagcccg
ctgatctgcgagacgcggatgggcgtgtgcgccaagtgctacgggcgtgaccttgcccgc
ggtacgcctgtgaacatcggcgaggcagtgggcgtcatcgcggcgcagtcgatcggtgag
cccggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgaa
acctcgaacctcgaggcggtctccgacggcacgatcgaactccgcgatctgccgacgatc
accgacagccgcggccgtcgcgtcgcacttgcccgcaacggcgagctggcgatcatcgac
accgagggccgcgagcgggcggtgcaccgtatcccctacggtgcccacctgatgttcgag
gatggcgcgaaggtctcgaagggcgatcgcatggcggaatgggatccgttcaccatgccg
gtcatcaccgagaagggcggtatcgtgaagttccaggatctgatcgagggcgccacgctc
accgagcagaccgacgaagcgaccggcctgacccagcgcgtcgtgaccgagaaccagtcg
cgcaaccgcaaggaagacctgcgtccgcgcatcaccctgctcgacgagggctcgggtgag
gccgcccgctacatgctggcaccgggtgcgatgctgtcggtcgaggaaggccagaacgtc
catgccggcgacgtgctcgcccgcgtgagccgcgaagccgccaagacccgcgacatcacc
ggcggtctgccgcgcgttgccgagctgttcgaggcgcgcaagccgaaggaaaatgcgatc
atcgcgaaggtctccggccgtgtcgtgttcggtaaggactataaggccaagcgcaagatc
ggcatccagccggaggatggcggcgaggtcgtcgagtatctgatcccgaagtcgaaggtg
atcgacgttcaggaaggcgactatgtcaagcgcggcgacaacctgatcggcggcagcccg
gatccgcacgatattctcgaagtgctcggcatcgagccgcttgcggaatatctcgtgtcg
gaaatccaggaggtctatcgtctgcagggcgtgaagatcaacgacaagcacatcgagacg
atcgttcgccagatgctgcagaaggtcgagatcaccgaagcgggcgacacgacgctgctg
ccgggcgagcaggtcgactgggaagagatgaccgagatcaacgagaaggtcattgccgaa
ggccgccagccggccgtcggcaagccgatcctgctgggcatcaccaaggcctcgctgcag
acccgctcgttcatctccgctgcgtcgttccaggagaccacccgcgtcctcaccgaggct
gcggtgcagggcaagaaggacacgctcgtcggcctcaaggagaatgtcatcgtcggccgc
ctgatcccggcgggcaccggcgccggcatgaaccgcctgcgcgtggcggcatcgagcaag
gacgccgccctgcgcgcccagcagcgcgcctggcaggccagcctcatcgcgccgaagtcg
gccgctgaggaacatgccgccgaactgcgccgcccggtgcaggacgacaccggcgacgac
gcgctcgccgccgtggttgccgacaccaatggcgaggacggcgcggagatctga
DBGET
integrated database retrieval system
