Sphingomonas sanxanigenens: NX02_17430
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Entry
NX02_17430 CDS
T03929
Name
(GenBank) RTCB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssan
Sphingomonas sanxanigenens
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssan03016
]
NX02_17430
Enzymes [BR:
ssan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NX02_17430
Transfer RNA biogenesis [BR:
ssan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NX02_17430
Prokaryotic type
tRNA splicing ligases
NX02_17430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AHE51711
UniProt:
W0A3U6
LinkDB
All DBs
Position
complement(3663260..3664498)
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AA seq
412 aa
AA seq
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MKEVVMTQTYDVQHAAGGVPVKMWTRGVPVDDKARAQLSRAAAMPFVFRHVAAMPDVHVG
IGATVGSVIPTKGAVIPAAVGVDIGCGMMAARTSLVASDLPDNLEGIRSAIEQAVPHGRS
VGRGKRDHGSWGDPPPAVVEAWATLAARFGQIVAKHPRLKNTNNLVHLGTLGTGNHFIEL
CLDQDQRVWVMLHSGSRGVGNAIGSYFIELAKQDMRKWFINLPDQDLAYFPEGTDHFDEY
VEAVGWAQDYAAVNRRMMMANVIRALRSRIAKPFEAELEAVNCHHNYVTREKHFGENVLV
TRKGAVRAAKGVLGIIPGSMGAKSFIVRGLGNAEAFDSCSHGAGRVMSRTQAKKLVTLAE
HIADTEGVECRKDDSVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggtcgtaatgacccagacgtatgacgtgcagcacgccgcgggcggcgtgccg
gtgaagatgtggacccgcggcgtgcccgtcgacgacaaggcgcgcgcgcagctttcgcgc
gcggcggcgatgccgttcgtgttcaggcatgtcgcggcgatgccggacgtgcatgtcggt
atcggcgcgaccgtgggttcggtgatcccgaccaagggcgcggtgattccggcggcggtg
ggcgtcgacatcggctgcggcatgatggcggcgcgcacctcgctggtcgccagcgacctg
ccggataatctggagggcatccgctcggcgatcgaacaggcggtgccgcacgggcgctcg
gtgggtcgcggcaagcgcgatcatggctcgtggggcgatccgccgccggcggtggttgag
gcgtgggcgacgctcgcggcgcgcttcggccagatcgtggcgaagcatccgcgactgaag
aacacgaacaacctcgtgcatctcgggacgctcggcaccggcaatcatttcatcgagctg
tgcctggaccaggaccagcgcgtgtgggtgatgctgcattcgggctcgcgcggcgtgggc
aatgcgatcggcagctacttcatcgagctggcgaagcaggacatgcgcaaatggttcatc
aacctgccggatcaggacctcgcctatttcccggaagggaccgatcatttcgacgagtat
gtcgaggcggtcggctgggcgcaggactatgcggcggtgaaccgccggatgatgatggcc
aatgtgatccgggcgctgcgcagccggatcgcgaagccgttcgaagccgagctggaagcg
gtcaactgccatcacaattatgtgacgcgggaaaagcatttcggcgagaatgtgctcgtg
acccgcaagggcgcggtgcgcgcggccaagggcgtgctgggcatcatcccgggttcgatg
ggcgcgaagtcgttcatcgtgcgcgggctcggcaatgccgaggcgttcgacagctgcagc
catggcgcggggcgcgtgatgtcgcgcacccaggccaagaagctggtgacgctcgccgag
catatcgccgacaccgaaggcgtggagtgccgcaaggacgacagcgtgatcgacgagacg
ccgaaggcgtacaagccgatcgaggcggtgatggcggcgcaggccgatctcgtggagatc
gtccacacgctcaagcaggtggtgtgcgtgaaggggtga
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