Spironucleus salmonicida: 94294334
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Entry
94294334 CDS
T10465
Symbol
SS50377_20311
Name
(RefSeq) Exosome complex exonuclease RRP4
KO
K03679
exosome complex component RRP4
Organism
ssao Spironucleus salmonicida
Pathway
ssao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94294334 (SS50377_20311)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssao03019
]
94294334 (SS50377_20311)
Messenger RNA biogenesis [BR:
ssao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
94294334 (SS50377_20311)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
94294334 (SS50377_20311)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP4
KH_6
Motif
Other DBs
NCBI-GeneID:
94294334
NCBI-ProteinID:
XP_067767736
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All DBs
Position
1:<568338..>569060
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AA seq
240 aa
AA seq
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MKETFRNLQINSIMPGDRLELPTNIIIGENIIQSGEYYFTQQTGVLLNEQKHYTIQHQNN
YFYIPDTRDFIIGRVHSLRLGAWSIELGAVQKGSINIDSLHLPGLLRIKNSADESHQRAW
LAENEVIAAEVRNIQGIQLNARSEQMGKLSHGYLVCGVSWQVASLRNVYQQDGVRVLVGR
NGWIWVSGQTDFSGESNSVIDQRIQDYTDEEMLIVIRCIQRVYYTIHSNLQLTEDIIFEE
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaacattcaggaatctataaataaactctataatgcctggagacaggttagaa
ctgcctactaatattattataggcgaaaatattatataatctggagaatactactttaca
tagcaaactggggtattattaaatgaataaaagcactataccatataacaccaaaataac
tacttttatataccagatactcgcgattttattataggtagagttcactcacttagatta
ggtgcatggtcaatagagctgggtgcagtttaaaaaggatcaattaatattgattcttta
catttacctggtttactaagaataaaaaattcagctgatgaatctcactaaagagcatgg
ttagcagaaaatgaagttattgctgctgaagttcggaatattcaaggtatttaattaaat
gcaagatcagaacaaatgggaaaattatctcatggatatctagtttgtggtgtatcatgg
taagtagctagcctgagaaatgtatatcagtaagacggtgtccgtgtacttgtagggaga
aacggatggatttgggttagtggttaaacagatttttcaggtgaatctaatagcgttata
gactaaagaatttaagattatactgatgaggaaatgttaattgtaattagatgtattcaa
agagtttactatactatacattcaaatttgtagctaacagaagacataatatttgaagag
tga
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