Spironucleus salmonicida: 94294951
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Entry
94294951 CDS
T10465
Symbol
SS50377_20928
Name
(RefSeq) Replication factor C
KO
K10755
replication factor C subunit 2/4
Organism
ssao Spironucleus salmonicida
Pathway
ssao03030
DNA replication
ssao03410
Base excision repair
ssao03420
Nucleotide excision repair
ssao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
94294951 (SS50377_20928)
03410 Base excision repair
94294951 (SS50377_20928)
03420 Nucleotide excision repair
94294951 (SS50377_20928)
03430 Mismatch repair
94294951 (SS50377_20928)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssao03032
]
94294951 (SS50377_20928)
03036 Chromosome and associated proteins [BR:
ssao03036
]
94294951 (SS50377_20928)
03400 DNA repair and recombination proteins [BR:
ssao03400
]
94294951 (SS50377_20928)
DNA replication proteins [BR:
ssao03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
94294951 (SS50377_20928)
DNA Replication Termination Factors
ELG1-RFC complex
94294951 (SS50377_20928)
Chromosome and associated proteins [BR:
ssao03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
94294951 (SS50377_20928)
DNA repair and recombination proteins [BR:
ssao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
94294951 (SS50377_20928)
Check point factors
HRAD17(Rad24)-RFC complex
94294951 (SS50377_20928)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
RCF1-5-like_lid
AAA_lid_RFC1
DNA_pol3_delta2
AAA_assoc_2
Mg_chelatase
RuvB_N
nSTAND_NTPase5
nSTAND3
DNAX_ATPase_lid
AAA_16
AAA_19
Motif
Other DBs
NCBI-GeneID:
94294951
NCBI-ProteinID:
XP_067768347
LinkDB
All DBs
Position
1:complement(<1353028..>1353978)
Genome browser
AA seq
316 aa
AA seq
DB search
MLPFIEKHRPQTLEDVVGNEPIVDRLKYFSVNGGLPNILMASPPGQGKTTIAHCLGRAML
KNQFKEAFLELNASDQRNVSDVRDRVRGFAERQVTLPAAFQKLVFLDECDAMTAQAQLAL
RRIIEDFSHTTRFILACNDISKISESLQSRTCVLMLSPVTPLEIKLRILRISEIENIKIE
TAAAEEIAKLADGDVRNAVNQLQSAAVLMDNDIKFVDLAQVLDVLTEDQGVEIINLCQSD
VNTAIKQCKEMSIDGFTGDEICQMLTRGVLSPKLSVSDLLRSRIMKLVAQAVARVSAGIN
GFVQIARCCAEISMVK
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgctcccctttatagagaagcaccgtcctcaaacgctagaagatgtcgttggaaacgag
ccgatagtagatcgtctgaagtatttttcggttaatggtggtctgccaaatattcttatg
gcatctccaccagggcaaggaaaaacaaccattgcacattgcttaggccgtgctatgctt
aaaaatcagttcaaagaagcatttttagagctaaatgcatcggaccagcgaaatgtatct
gacgtccgtgaccgtgttcgtggcttcgccgaacgccaagtaacgcttccagcggccttt
cagaagcttgtttttctcgacgagtgcgacgcaatgacggcacaggcacagctggcgctc
cgacgaatcatagaggacttctcgcacaccacgcgcttcattttggcctgcaacgatatt
tcaaaaatatctgagtcacttcagtctagaacctgtgtgctcatgctctcaccggtgacg
cctcttgagattaagctaagaattttacgaatttctgaaatcgaaaacatcaaaatcgag
accgcggctgccgaggaaattgcaaaactagcagacggggatgtccgaaacgctgtgaat
taactgcagtcagctgctgtgcttatggacaatgatatcaagtttgtagatctggctcaa
gttcttgatgttcttactgaagattaaggagtggaaatcatcaatttgtgtcaaagtgac
gtgaataccgcaatcaaacagtgcaaggaaatgagcatcgacgggttcacgggtgatgag
atttgtcaaatgcttactaggggagttctgagcccgaagctttccgtgagcgacctgttg
cgaagccggatcatgaagctcgttgcgcaggccgtcgcgcgggtcagcgctggtatcaac
ggtttcgtccaaatagcccggtgttgcgcggaaatcagcatggtcaagtga
DBGET
integrated database retrieval system
