Spironucleus salmonicida: 94296034
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Entry
94296034 CDS
T10465
Symbol
SS50377_22011
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ssao Spironucleus salmonicida
Pathway
ssao03008
Ribosome biogenesis in eukaryotes
ssao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
94296034 (SS50377_22011)
09123 Folding, sorting and degradation
03018 RNA degradation
94296034 (SS50377_22011)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssao03021
]
94296034 (SS50377_22011)
03019 Messenger RNA biogenesis [BR:
ssao03019
]
94296034 (SS50377_22011)
03009 Ribosome biogenesis [BR:
ssao03009
]
94296034 (SS50377_22011)
03016 Transfer RNA biogenesis [BR:
ssao03016
]
94296034 (SS50377_22011)
Transcription machinery [BR:
ssao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
94296034 (SS50377_22011)
Messenger RNA biogenesis [BR:
ssao03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
94296034 (SS50377_22011)
Ribosome biogenesis [BR:
ssao03009
]
Eukaryotic type
Pre-60S particles
RNases
94296034 (SS50377_22011)
Transfer RNA biogenesis [BR:
ssao03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
94296034 (SS50377_22011)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
94296034
NCBI-ProteinID:
XP_067767220
LinkDB
All DBs
Position
2:<1461750..>1464038
Genome browser
AA seq
762 aa
AA seq
DB search
MGIPQFFRWLQKRYPNIISDRPQLPIDNLYLDLNGLVHPCFHPPERTILNEDQVFQEMFI
LMDKVIKAVNPQKLVYIAVDGCAPRAKLQQQRKRRFISAYEKQQKIIDLKKDLGEEALKE
YLDNSMDQNCITPGTEFMVKLKKALVYYTSTRYTVNFILDDWSTPGEGEHKIMSFIRSQR
SKPDYSVKTSHCIYGLDADLIMLALSSHEPNFFIFRDYINFDKQQTLCKYCAQLLNNKSQ
AQDVIAHIAGNCPNFKHLGQPPIANSHKFFSVNIYTFRQYLFQEFNCPANFERILDDFVF
LCFLAGNDFLPHISCLKIDDGGIIRLIQVYNQSVLPTKRFITDSGFVDYQIFAVFIFELS
KAENTILRKLWNEKRRYKTIMVDKKIRELSMQIEKLQLENAPQEEIDRLFVKRHKMIENP
DISQEMQDYNIKFETQKLDENDTQKILLQYISVQSDVYKPDFKEKYYNRNIKNVKDACHS
FLRGMSWVCHYYARGCNDWEWCYEFDFAPLVEDLIIHIKTYKHEPFNLASQPLLPYQQLL
AVLPPASVQLLPAAYRNLMLDPNSPLRPFYPNRIVCDASHAHALWAAEICMPPVDIGKII
SESEKCTPNLKEFEIDANKFRDPVIILMKKNEFLDTSIANLEQNQTNFFNQSCAQSYSGY
YKKEAFEVVQNTFLVYRNNFKAISDFYCQKNDSGDSFYSFQPEKPVFNSKVRLSFSNCKV
SPGFQLSKCYLPDSLTTGFNLSSWQSSLQKRQRDDDSIWRVQ
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgggtattccacaatttttccgttggttgcagaaaagatatccaaatatcatatctgat
agaccctagctacctattgataatctatatttagatttaaatggtttagtacacccttgc
ttccaccctccagagagaacaatactcaatgaagattaagttttctaagaaatgtttatt
ctgatggataaagttataaaagcagtgaacccgtaaaaattagtttatattgcagttgat
ggttgtgcacctcgggctaaactttaataacaaagaaaacgtcgttttatttctgcatat
gagaaatagtaaaaaattattgatttaaaaaaagatctaggtgaagaagcacttaaagaa
tatttagataattcaatggattaaaattgcattactcctggtacagaatttatggttaaa
cttaaaaaggcattagtatattatacttctacaagatatacagttaattttattttagat
gattggtcaactccaggagaaggagaacataaaattatgtcttttatcaggtcataacgt
tcaaagccagattactcagtaaagacttctcattgcatttatggtcttgatgctgatctg
atcatgcttgctctatcttctcatgaaccaaattttttcatatttagagattatattaat
tttgacaaataacaaacactatgcaaatattgtgcataattgctaaacaataaatcatag
gcataagatgttattgcacatattgctggaaactgtccaaattttaagcatttagggtaa
ccaccaatagcaaattctcataagtttttctcggttaatatttatacattccgataatat
ttattctaagaatttaattgtccggcaaactttgaacgtatattagatgattttgtattt
ttatgcttcttagctgggaatgattttcttccacatatttcatgcttgaaaattgatgat
ggaggtattattcggttaatataagtttataaccaaagtgtattgcctactaaacgtttt
attacagactcaggatttgttgattatcaaatttttgctgtttttatttttgaactatca
aaggctgaaaatactattttaagaaaattatggaacgaaaaaagaagatacaaaacaatt
atggtggataaaaaaattagagaactatctatgtagattgaaaaattatagcttgaaaat
gccccttaagaagaaattgaccgtttatttgtcaaaagacacaaaatgatagaaaatcca
gatatttcataagaaatgcaagattataatataaaatttgaaactcaaaaacttgacgaa
aatgatacctagaaaatcctcctttagtacatatctgtataatcagatgtttacaagcct
gattttaaagaaaagtactacaaccgaaatatcaaaaacgtcaaagatgcatgccattca
tttttaagaggtatgtcatgggtgtgccactattatgcaagaggttgcaatgattgggag
tggtgttatgaatttgattttgcaccgctagtagaagatcttataattcatattaaaacc
tacaaacatgaaccgttcaatttggcatcttagcctctccttccttactagcagcttcta
gctgtactaccaccagcatctgtatagcttctgccagctgcatatagaaacttaatgtta
gatccaaattcaccactaagaccattttacccaaatagaattgtatgcgatgcttcgcat
gcacatgctctttgggcagctgagatttgcatgccaccagttgatatcggaaaaattatt
tctgagagcgagaaatgtactccaaacctaaaagagtttgagattgatgccaataaattt
agagatcctgttattattcttatgaagaaaaatgagtttttagatactagtatagcgaat
ttagagtagaattagactaactttttcaattaaagttgtgcataatcttattctggatac
tataaaaaggaagcttttgaggtagtttagaacacctttttggtttacagaaacaacttt
aaagctatttctgacttttattgttaaaagaacgattctggggactcattttattcattt
taacctgaaaagccagtatttaacagcaaggtgcgtctatctttcagtaactgcaaagtt
agcccagggttttagctaagtaagtgttatttacctgactcgcttactactggattcaac
ttgagctcatggcagtcatcattgcaaaaaagataacgtgatgatgatagtatttggaga
gtttaatga
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