Spironucleus salmonicida: 94297275
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Entry
94297275 CDS
T10465
Symbol
SS50377_23252
Name
(RefSeq) Eukaryotic translation initiation factor 4A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ssao Spironucleus salmonicida
Pathway
ssao03013
Nucleocytoplasmic transport
ssao03015
mRNA surveillance pathway
ssao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94297275 (SS50377_23252)
09122 Translation
03013 Nucleocytoplasmic transport
94297275 (SS50377_23252)
03015 mRNA surveillance pathway
94297275 (SS50377_23252)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssao03019
]
94297275 (SS50377_23252)
03041 Spliceosome [BR:
ssao03041
]
94297275 (SS50377_23252)
03009 Ribosome biogenesis [BR:
ssao03009
]
94297275 (SS50377_23252)
03012 Translation factors [BR:
ssao03012
]
94297275 (SS50377_23252)
Enzymes [BR:
ssao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
94297275 (SS50377_23252)
Messenger RNA biogenesis [BR:
ssao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
94297275 (SS50377_23252)
mRNA cycle factors
Stress granule specific factors
94297275 (SS50377_23252)
Spliceosome [BR:
ssao03041
]
Complex C
Other components
EJC/TREX
94297275 (SS50377_23252)
Ribosome biogenesis [BR:
ssao03009
]
Eukaryotic type
90S particles
Helicases
94297275 (SS50377_23252)
Translation factors [BR:
ssao03012
]
Eukaryotic type
Initiation factors
eIF-4
94297275 (SS50377_23252)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Beta-ketacyl_N
SWI2_SNF2
UvrD-helicase
AAA_19
WhiA_N
NAT10_TcmA_helicase
NeuB
AAA
AAA_22
Gal11_ABD1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
94297275
NCBI-ProteinID:
XP_067766385
LinkDB
All DBs
Position
3:complement(<1552398..>1553462)
Genome browser
AA seq
354 aa
AA seq
DB search
MTLNNFEELPYIIAKNTYLYGYQTPSIPQQNTIPVMREKKSVLVQASPGTGKTAAFIIGG
YLSININSANLQIIIVSPTRELSNQTYRVAQILTDLKCQQVISQVDLFNFRKSKYQLICT
TLDKFNKIFDPKTVKVVIFDEVDQMLTENFDQIQQISQLCKDKQVGLFSATFSVKNLDLI
NQLFKIDQKIFIQNKLNQKANNNHYYVQVQEDIKNSIVSSVLSSFLFVQAIVFCNTKKAV
NIVSTFLQKQKFKSQPLHSSINQEIRTNTVQQFYNGEFRVLVTTDVFGRGMDVRQVTLVV
HYDIPQEIESFEHRSGRSGRFGRQGKVVGICQSDEEMSILQDFYSKLSLQHSEI
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgacattaaataattttgaagagcttccttatattattgctaaaaatacttatctatat
ggttattaaacaccgagtataccataataaaatactatacctgtcatgagagagaagaaa
tcggttttggtataggcttcgccaggaactggaaaaactgcagcttttattattggtgga
tatttatccattaatataaattctgcaaatttataaataattatagtttctcctacacgg
gaactttcaaattaaacttatagggtagcttaaatattaacggatttaaaatgccaataa
gtaatatcttaagttgacttgtttaattttagaaaaagtaagtactagcttatatgtaca
actttggataaatttaataaaatttttgacccaaaaacagttaaggtagttatttttgat
gaggttgattaaatgttaactgagaattttgattaaatttaataaattagtcagttatgt
aaggataaataggttggattattttcagctactttttcagtcaaaaatttagatctaatt
aaccaactctttaaaattgattaaaaaatatttattcaaaacaaattaaattagaaagca
aataataatcattattatgtataggtataagaagatattaaaaattcaattgtttcatct
gtgttatcatcatttttatttgtttaggctatagtcttttgtaatacaaaaaaagcagtc
aatattgtatctacatttttataaaagtaaaaatttaaatcataacctttacattcatct
attaattaggaaatcagaacaaatactgtgtaatagttttataatggagaatttcgtgta
ttagtgacaactgatgtgtttggaagaggcatggatgttcgctaagtaacattagtggtt
cattatgacatcccttaagagatagaatcttttgaacatagatctgggcgttctggtaga
tttggacgttaaggaaaagtagttggtatatgttaatctgatgaagaaatgtcaatattg
taagatttttattctaaactatcattataacatagtgaaatctga
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