Spironucleus salmonicida: 94297482
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Entry
94297482 CDS
T10465
Symbol
SS50377_23459
Name
(RefSeq) ATP-dependent RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ssao Spironucleus salmonicida
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssao03019
]
94297482 (SS50377_23459)
03041 Spliceosome [BR:
ssao03041
]
94297482 (SS50377_23459)
03036 Chromosome and associated proteins [BR:
ssao03036
]
94297482 (SS50377_23459)
Enzymes [BR:
ssao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
94297482 (SS50377_23459)
Messenger RNA biogenesis [BR:
ssao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
94297482 (SS50377_23459)
mRNA cycle factors
Common to processing body (P body) and stress granule
94297482 (SS50377_23459)
Spliceosome [BR:
ssao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
94297482 (SS50377_23459)
Chromosome and associated proteins [BR:
ssao03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
94297482 (SS50377_23459)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UTP25_NTPase-like
CMS1
DUF1258
Motif
Other DBs
NCBI-GeneID:
94297482
NCBI-ProteinID:
XP_067764298
LinkDB
All DBs
Position
4:complement(95707..97446)
Genome browser
AA seq
579 aa
AA seq
DB search
MTDKNDNNPGIYVPPQLRQQLESGQVTSNIYVPQKQAFKPAQNSSYKQQSYTSQNSQQPR
NFDGFNQLKTVGGGLTASEAMIYPPIERVLFDIEKRAIYESFDGMKQDITFPTNILPTKN
AESIIDLQLPDIIMKNMARCHYSQLTPIQTCSIPIIQAKHDILALANTGAGKTAAFAIPI
IQNLITNNQQHDRQCRPKALIIVPTRELAIQTTLSFYRLSFGTNLKVRIAYGGDSKYDQM
QPLKQGCDILIGTPGRLNDFLKSSVINFEDVKYLVLDEMDRCFEDGFEIQVKTLVKTMPT
KRQTLLFSATNPPAVLHFVKDYTNNVVQVKIGDSGVCKQIVQKVMVLKESQKFEQLVQLI
EEYKEQKILVFTETKRKTGNLAYELNQKELRVEQLHGDMEQKERTMAMSRFKAGSRILIC
TDVAQRGIDLSGIGLVINYDLPKKTEDYTHRIGRTGRVGTAGVAISFVTTPVDYNLITYI
SQQIKENGGEISEDLQGLLSRNNFRGSRDNGDRREKSAYVERRDYGSNDRRDRGGNGRDR
FSTVQQSARPESLFKPVPQQPKIDIQQQNVAEDIDWDEM
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaaaatgacaataacccaggcatttatgtgcctccacaacttagataacaa
cttgaatctggataggtaacatctaatatttatgtaccatagaagcaggctttcaaacca
gcatagaatagttcatataaatagtagtcttacacctcttaaaattcttaataaccaaga
aattttgacggatttaactaacttaaaacagttggtggcggtttgacagcctctgaggct
atgatttatcctccaatagaaagagttctttttgatattgaaaaaagggcaatttatgaa
tcatttgatggtatgaaataagacataacattccctactaatatattacccacaaaaaat
gcagaaagtatcatcgatttataacttccagatatcattatgaagaatatggcgcgttgc
cattatagctaattgacacctatttaaacttgttctattcctattatttaagctaagcac
gatatactcgcactagctaatactggtgctggtaaaacagctgcctttgctataccgata
atctaaaatttgatcacaaataattaataacatgataggtaatgtagaccaaaagctctt
attattgttcctacaagagaacttgccatatagactactttaagtttttatagactgtct
tttggtacaaatttgaaagtaagaatcgcttatggcggagattccaaatatgactaaatg
tagcccttaaaataaggttgcgatattttaattggtacacctggtagattaaatgatttc
ttaaaaagtagtgtcattaattttgaagatgtaaaatatttagttttggatgaaatggac
cgttgctttgaagatggatttgagatttaggtaaaaactcttgtcaagactatgccaact
aaaagatagaccttattattttcagcaactaatccaccagctgtacttcattttgttaag
gactatactaataatgttgtataagttaaaattggagattctggggtttgtaaataaata
gtataaaaagttatggttctaaaagaatcttaaaaatttgaatagttggtttagttaatc
gaagagtataaagaataaaaaattttagtttttacagagacaaagcgtaaaactggaaac
ttggcatatgaattgaattaaaaagaacttcgtgttgagtaactgcatggggatatggaa
taaaaagagagaacaatggctatgtctagatttaaagcaggatctagaatactaatttgc
actgatgttgctcagcgtgggattgatttatcaggtattggtcttgtaataaattatgat
ttacctaaaaagacagaagactacacacatagaataggtagaactggacgtgtaggcact
gctggtgtggctatttcatttgttacaactccagtagattataatctaataacttatatt
tcttagtaaataaaagagaatggaggtgaaatttctgaagatttataaggattattatca
aggaataattttagaggatctagagataatggagatagaagagaaaaaagtgcgtatgtt
gaaagaagagactatggtagcaatgatagaagagacagaggtggcaatggtagagataga
tttagcactgtataataaagcgcaaggccagaatctttatttaaacctgtaccatagcaa
ccaaaaattgatatataataacaaaatgttgctgaagatattgattgggatgaaatgtga
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