Spironucleus salmonicida: 94298311
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Entry
94298311 CDS
T10465
Symbol
SS50377_24288
Name
(RefSeq) DNA-directed RNA polymerase subunit beta
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ssao Spironucleus salmonicida
Pathway
ssao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
94298311 (SS50377_24288)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssao03021
]
94298311 (SS50377_24288)
Enzymes [BR:
ssao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
94298311 (SS50377_24288)
Transcription machinery [BR:
ssao03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
94298311 (SS50377_24288)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpa2_4
RNA_pol_Rpb2_4
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-GeneID:
94298311
NCBI-ProteinID:
XP_067765106
LinkDB
All DBs
Position
4:1249703..1253050
Genome browser
AA seq
1115 aa
AA seq
DB search
MFIPKKFNVSPGIKGPVNNQHQQSSDHFRGYPQHFDDKFQKLMVRSHTESFNSFVSNLQI
IADTAPLVHFNEFSVKYKSLQLGIPCSYPQVCRDSCISYESPLSAVLEISYKGDVIYQTV
TIGTIPIMVGAQISHTGSLNRQTKPLIAEDETDFGGYFIINGVEKILRMLVANRRNYMVS
MERTAFYKRGSNFTKYGISFKSVREDERGQTLILHALKDGSATLRVLIDKREYFIPVAIL
LRALKQTSDKEIYTKIVTLRNKSETTEEKAQNLYITERVQMMLRDHHKNSIWKRDTAVEY
IGKNFRAILPQYFQDKSDFEAGEYFLKRHIFWHLTDFEDKYNLIIELIHQLYLLTMGTIQ
PDNNDSTANHEVLLPGHLLTMFISECCENFLTSVSYAVQKRYKPLEEKNNIQEFIDKYPI
FRQSSFAGVKTLLSTGNLISTTGLDLLQINGFAVTADRLNFVRFMAHFRSIHRGAFFTEM
KTTAVRKMLPESFGFLCVVHTPDGGPCGLLNHLCSGCDIVQKCDVFGQSTIEQIIRSAGL
VKYDEYEGFEGCSSVPVMLDGKLLGFLPEVGLIDDEGRSGHIYNLINQLRLLKSNGTISN
RTEIVYIPHNNKIRMKGQLSLYTTASRYSRKVHSLLSDRLEYIGSQEQLFLDIAMLQNEI
RVPYTTHQELSPISMLSTVASLVPWPDHNQSPRNMYECQMLKQTMGFPARSMDYRIESKS
YRIMTPQRPMIRTVMHDKGGFDTHPTGTNVIVGVLAYTGYDMEDACLINKAAIERGVFHG
VVYTVHTMELEKDEFFKGPMTPSGKHDCDGLPIIGCHITKGDILCYVYNKTKDKIHEDIY
RKGESGVIEKVIVCKTTRAPTFARIVIRHDRSPIIGDKFASRHGQKGTLGIKYHGRDMPF
CHSTGMTPDLIINPHAFPSRMTIGMLLESLAGKYCAQTGQYADATPFQFSNERRCLDHYG
QNLEQLGYCKYGSEQLYSGITGEAMTCQIFIGMVYYQRLRHMVNDKYQVRARGLVTEALG
QPVKGRSRGGGTRFGEMERDALIGHGTAALLRGRLCTESDGRIVEICEDCGGIWIQDGKC
QVCQGALKKCIMPQVCLALVSELSGMGVKMSFKVE
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgttcattcctaaaaaattcaatgtttcacctggtattaagggaccagttaataattaa
cattaataaagttctgatcattttagaggttatccttagcattttgatgataagttttag
aagcttatggttagatcgcacactgaatcttttaactcgtttgtatctaatttgtagatt
atcgcagatacggcacctttagtacattttaatgaatttagtgttaaatataaatcatta
taattaggtattccttgctcttatccttaggtctgcagggattcctgtatttcatatgag
tcacctctttcagcagttttagaaatttcatataaaggtgatgtaatctactaaactgtt
actattggtactatacccattatggttggtgcttaaatttcccatactggaagtttaaat
agataaactaaacccttgattgccgaggatgaaaccgatttcggaggatattttattatc
aatggcgttgaaaagatattgcgtatgctagttgcaaatagaagaaattatatggtatct
atggaacgaacagctttttataaaagagggtctaattttactaaatatggtatttcattc
aaatccgtaagagaagatgaaagagggcaaacacttatattgcatgcattaaaggatggg
tcagcaactcttagagtcttaattgataaacgtgaatattttatcccagtggctattctg
ttaagagcattaaagtagacatcagataaagaaatttatactaaaattgttacacttaga
aataaatctgaaactacggaagaaaaggcttaaaatttatatattacagaacgtgtttaa
atgatgctcagagaccatcacaaaaattctatttggaaacgtgacacggcagttgagtat
attggcaaaaactttagagccatattaccatagtatttctaagataaatcagatttcgaa
gcaggagagtatttcttaaaaagacatattttttggcatctaacagattttgaagataaa
tataatctaattattgaattaattcattaactatatttgcttactatgggaactatttaa
cctgataataatgattctactgcaaaccatgaggtcttgcttccagggcatttattaaca
atgtttatatctgaatgttgtgaaaactttttaacgtcggtatcctatgccgtataaaaa
agatataaaccattagaagaaaagaataacatctaagaattcatagataagtatccaata
tttagataaagtagttttgctggggtgaagactcttttatctacaggaaatttaatctct
actactggtttagatttattgtaaataaatggttttgcagttactgcggatagacttaat
tttgtccgttttatggctcacttcagatcaattcatagaggcgcatttttcactgaaatg
aaaacaaccgctgttagaaagatgctgcctgaaagttttggatttttatgtgtagtacat
actccggatggtggaccatgtggtcttcttaatcatttatgttctggttgtgatatcgtt
taaaaatgtgatgtttttggccaatctactattgaatagataattagaagtgcaggattg
gtgaaatatgatgaatatgaaggatttgaaggttgcagtagcgtgcccgtcatgctggat
ggtaaattattaggtttcttacctgaagttggactcatagatgatgaaggcagaagtggt
catatttataatttgattaattaattaaggttacttaaaagtaatggtactattagtaat
agaacagaaatagtttatataccacataataataaaataagaatgaaaggttaactttca
ttatatactacagctagtagatatagtcgtaaagtacatagcttattatctgataggtta
gaatatattggtagtcaagagtagttatttttagacattgctatgctctaaaatgaaata
agagtaccatatactactcattaagaactatcgcctatttcaatgcttagtactgttgct
tcattagtcccatggcctgaccataattagtcaccacgtaatatgtacgaatgctaaatg
cttaaacagacaatggggttccctgctagatcaatggattatcgcatagaaagtaaaagc
tacagaataatgacaccataaagaccaatgattagaactgttatgcacgataagggtggg
tttgatacacatcctactggcacaaacgttatcgttggtgttttagcttatactggttat
gatatggaagatgcatgtctaattaataaagcagctattgaacgtggtgttttccacggt
gtagtttataccgtacatacaatggaacttgagaaggatgaatttttcaaagggcctatg
actccttcaggaaagcatgattgtgatggtctacctataatagggtgtcatataactaaa
ggagatattctatgttatgtttacaataaaactaaagacaaaatccatgaagacatatat
aggaaaggagaaagtggtgttatcgaaaaagttattgtgtgcaaaactacccgcgctcct
actttcgccagaatcgttattcgtcacgatcgttctccaatcattggggataaattcgca
tctcgtcacggtcagaaaggtactctaggcatcaaatatcacggccgtgacatgccattc
tgtcattcaacaggtatgaccccggatctcatcattaatccacatgcgttcccttcaagg
atgacaatcggcatgcttttagagtctcttgcaggaaagtactgcgcccaaacaggttaa
tatgcagacgccactccattttaattttctaatgagcgccgctgtctggatcattatggc
caaaatttggaacagctcggttattgcaaatacggttcagaatagctatattcaggcatc
accggcgaggccatgacgtgctaaattttcataggaatggtctattatcaaaggctcaga
cacatggtaaacgacaaatatcaagtgcgtgctagagggttagtaacggaggcactgggc
tagccagttaagggccgttctagaggcggcgggacgcgtttcggagaaatggaaagggac
gctctaattggtcacggaacagcagctctgttaaggggcagattgtgcacggaaagcgac
ggcagaatcgtggagatctgcgaggattgcggcggaatttggatccaggacggaaagtgc
caagtgtgctaaggggccttgaagaagtgcatcatgccgcaggtgtgtctggcgctcgtt
agcgagctgagcggaatgggggtcaaaatgtcgtttaaggtcgagtga
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