Spironucleus salmonicida: 94298314
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Entry
94298314 CDS
T10465
Symbol
SS50377_24291
Name
(RefSeq) DNA-directed RNA polymerase subunit beta
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ssao Spironucleus salmonicida
Pathway
ssao03020
RNA polymerase
ssao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
94298314 (SS50377_24291)
09124 Replication and repair
03420 Nucleotide excision repair
94298314 (SS50377_24291)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssao03021
]
94298314 (SS50377_24291)
03400 DNA repair and recombination proteins [BR:
ssao03400
]
94298314 (SS50377_24291)
Enzymes [BR:
ssao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
94298314 (SS50377_24291)
Transcription machinery [BR:
ssao03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
94298314 (SS50377_24291)
DNA repair and recombination proteins [BR:
ssao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
94298314 (SS50377_24291)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
94298314
NCBI-ProteinID:
XP_067765109
LinkDB
All DBs
Position
4:complement(1258960..1262622)
Genome browser
AA seq
1220 aa
AA seq
DB search
MQQSYLRTEHVWKVIDAYFNSNSISRPQISSFENFMDNIPKITQQAPPIIYDVIDTNSSS
TMRSYRYEIRIQNVFPAQQLASSSPNSCRLQNETYQIPLTAQVNIIEKLIENGHLKQESQ
QTENMPFCKMPILVGSKFCYLPKNQKQKKIACGECPFDEGGYFIINGSEKAVIASEVNRS
NRVQVLTTPENELSARVVSSIPEKALYCKLEVKMCKMKNKLNNNIMNLLMVNMPGFDAPV
NLFIMLAALQPTESITSEDLLKIVTPEGDQDIIEACLPSLDVYSDLSPLEALEYLSENLK
LNVLQQSELASTKALRMRSHLITRFMPHMGTEPTDTIKKSRFLGYMAKLVLKTHLNQRPQ
DDRDHWGQKRLQLTGSLLFDLFRRCYEDFQKGLAKRCADKKVSMHSFFEQKIDFEKLAFK
QISQQIISSLATGNWRTGKLGAVAGLKTGVSQNLIRLSYAAAISQIRRASSGIEESSKAI
APRMLHGTQFGYLCPAETPEGAKVGLVKNFSLQCYITVGGGDRDFQKIWGIIDSLRIDGE
KAFQRVEEEITGVKLFLNGKWIGCVRSELGDRVAKHLRGMRSKNQISFETGISFNQEQQE
LVIACDEGRVMRPLFVVNSENDQENKICTKLELSLKSTDVIDICGDLNEKTKSEAWEKLV
SHHQMFIEYLDPYEEEQALISFSLQQLQDEIALIQKSNLWLLNKSIQLPRLPTQYTHLEI
HPSLMLSAIAALIPFPDHNQSPRNLYQSSMGKQAIGIYALNFNKRFDTSGINVMHYPQIP
MCQTRTLKYVKFTDLPAGENMIVAIAVYTGFNQEDSLIMSHAAVDRGLMRCTYYQSHETT
CETQHIGMSSGDYQPKLCRPIDGVTHVIDPQCRNYLEADGLPKIGASVRDGKVIIGKAEP
LKDANNRTGSTGVVFVDKSILAKNDEIGYIDAACICLEHMNSQSSEIEGGQISAKVRVRA
SRPPQMGDKFASRHGQKGTVGMLYRHEDLPYTVDGITPDIIVNPHAIPSRMTIGQLLECV
GSKFGCILGRIVDGTPFEPPLEGISHEEFLCKNLHSCGFQKHAYEAMFCGFTGSLLNYRI
FIGPTFYQRLKHMVLDKVSARATGQIVTITRQPNEGRQRYGGMRIGEMERDAFIAHGTAA
VLRDRLMFSSDATDFLVCVKCGQICWHANLNEITSQNAPNCKLCNASAKFAKVTLPYATK
YLFQEIMGMGVFPSIQVEVE
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgcagtagtcatatcttaggactgagcatgtgtggaaagtcatagatgcctattttaac
tctaattcaatctcaaggcctcagatatcttcctttgagaactttatggataatattcca
aaaataacttaataagctccaccgatcatttatgacgtcattgatacaaactcctcttca
accatgcgttcttatcgctatgaaattcgtatccagaatgtgtttcctgcatagtaactt
gcatcttcatcgccaaattcttgccgtctgtagaatgaaacatattaaattcctttaact
gctcaagtaaatattatagaaaaattgattgaaaatggtcatttaaaataagaatcatag
taaaccgagaatatgccattttgtaagatgccaattcttgtaggaagtaaattttgttac
cttcctaaaaactaaaaataaaagaaaatagcatgtggtgagtgtccttttgatgaaggt
ggttattttattataaatggaagcgagaaagctgttattgctagtgaagttaatagatca
aatcgtgtttaagtactcacaacacccgagaatgaattatcggcacgtgtcgtatcatca
atccctgaaaaagcactttattgtaaattggaggttaaaatgtgcaaaatgaagaacaaa
ttaaataacaacataatgaatttactcatggtaaatatgcctggttttgatgcacctgtt
aatttattcataatgttagcggctttatagcctactgagtctattacttccgaagattta
cttaaaattgtaactccagaaggagattaagatatcattgaagcctgtttacctagtttg
gatgtttatagcgatttgtcacctttggaagctttagaatatctttctgaaaatctcaaa
ttgaatgttctatagtaatctgagttagcttctactaaagctctacgtatgcgttcacat
ttaattactcgctttatgccacatatgggaacagaacctactgatacaattaagaaatca
cgtttccttggctatatggctaaattagttctaaaaacacatttaaattaacgtcctcaa
gacgatcgtgatcattggggtcagaaacgactataattaacaggctcattgctttttgat
ttattccgccgttgttatgaagacttttagaaaggattagcaaaacgttgcgctgataaa
aaagtatcaatgcactcattttttgaataaaaaattgacttcgaaaaacttgcgtttaaa
taaataagtcaataaataatttctagtcttgctactggaaattggcgaactggaaaacta
ggagctgtagctggactaaaaacaggtgtgagttaaaatttaattcgcctgagttatgct
gctgcaatttcttaaattagaagagctagctctggaattgaagaaagtagtaaagctata
gctccacgaatgctccacggtacataatttggatatttatgccctgctgaaacgccagaa
ggtgctaaagtcggcctagttaaaaattttagcttgtagtgttacattactgttgggggt
ggagatcgtgatttctaaaaaatttggggtattatcgatagcttacgtattgatggcgaa
aaagctttctaaagagttgaagaggaaattactggcgtaaaattatttttaaacggtaaa
tggataggatgcgttagaagtgaattaggagatcgcgtcgctaagcacttacgcggaatg
agaagcaaaaatcaaatcagttttgaaactggtattagtttcaatcaagaacaacaagaa
ttagttattgcatgcgacgaaggacgtgttatgagaccgctatttgtagtcaacagcgaa
aacgactaagaaaacaaaatatgcactaaattagagctttcattgaaatccactgatgta
attgatatttgcggagatttaaacgaaaaaacgaagtcagaagcctgggaaaaacttgtc
agccatcaccagatgttcatcgagtatttggacccatatgaagaagagcaggccctcatt
tccttttcgcttcagcagctttaagatgaaatcgccctcatctaaaaatcgaatctctgg
cttctgaacaaatcaattcagctgccccgccttccaacttaatatacacacctggaaatt
cacccatcattaatgctttcagcgatcgcagcgttaatcccgttccctgatcacaactag
tctcctcgtaacctctattagtcgtctatgggcaagcaggcaattggaatttacgcacta
aatttcaacaagcgcttcgacacctctgggatcaacgtaatgcactacccgcagattcca
atgtgctaaacccgcacgctcaaatacgtcaaattcaccgatttgccagctggcgagaac
atgatcgttgcaattgcagtttacactggtttcaaccaggaggactcattgatcatgtcg
cacgctgctgtagaccgtggtttgatgcgctgtacttactatcagtctcatgagacgact
tgcgaaacgcagcacatcggaatgtcgtccggggactatcagccgaagctttgccgccca
atcgacggcgtcacgcacgtgatcgatccgcaatgccgaaattatcttgaggcggacgga
ttgccaaaaattggggcttctgtacgtgacggtaaggtcattatcggcaaggcagagcct
ctgaaggacgcgaataacaggactgggtcaacgggagttgttttcgtcgataagtcaatt
ttggccaaaaacgacgaaatcggctacatcgatgcagcctgcatctgtttggagcatatg
aactctcagtcgagcgaaatcgaaggcggtcagatctccgcaaaagtacgagttcgggcc
tctagaccgccccaaatgggcgataaattcgcctctaggcacggtcagaaaggaacggtt
ggaatgctttatagacacgaggacctgccttatacggtcgatggcatcacgcctgatata
atagtcaatccgcacgctatcccatctagaatgacgattggacagcttttggaatgcgtc
gggtcgaaattcggttgtatcttgggccgaatcgtcgacgggacaccttttgagcctcct
ctagaaggaatttcgcacgaagaatttttgtgcaaaaatttgcattcctgtgggttttag
aaacatgcttacgaggcaatgttttgcggttttacgggtagccttttgaactatcgaatt
ttcatcggacccactttctatcagcgtctcaagcacatggttttggacaaagtttcggct
cgtgcgactggccagatagtgactatcactaggcaacccaacgaaggtcgctaaaggtat
ggaggcatgagaatcggtgaaatggagcgtgatgcgttcatcgctcatggcactgctgcc
gttttgagggacaggctgatgttttcaagcgacgcaacagactttttggtgtgcgtgaaa
tgcgggcagatatgctggcacgcgaatttgaacgaaattacgagtcagaacgcgccaaac
tgcaagctctgtaatgccagtgcaaagttcgctaaggtcacgcttccgtatgccacaaag
tacttgttttaggagattatgggaatgggcgttttccctagtatttaggttgaagttgag
tga
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