KEGG   Spironucleus salmonicida: 94299511
Entry
94299511          CDS       T10465                                 
Symbol
SS50377_25488
Name
(RefSeq) WD40 repeat protein
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
ssao  Spironucleus salmonicida
Pathway
ssao03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ssao00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    94299511 (SS50377_25488)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssao04121]
    94299511 (SS50377_25488)
   03036 Chromosome and associated proteins [BR:ssao03036]
    94299511 (SS50377_25488)
Ubiquitin system [BR:ssao04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     94299511 (SS50377_25488)
Chromosome and associated proteins [BR:ssao03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     94299511 (SS50377_25488)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_RIG_2nd WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40 Beta-prop_WDR36-Utp21_1st WD40_WDHD1_1st WDR55 Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd WD40_RFWD3 WD40_MABP1-WDR62_2nd Beta-prop_Vps41 MIOS_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Tricorn_2nd Beta-prop_DCAF4 Beta-prop_WDR41 PEP5_VPS11_N Beta-prop_ACSF4 WD_LRWD1 Cytochrom_D1
Other DBs
NCBI-GeneID: 94299511
NCBI-ProteinID: XP_067764141
UniProt: A0A9P8LSA1
LinkDB
Position
5:1529463..1530335
AA seq 290 aa
MRLAICSCDLEHKNFVEVIQFNKQSQQLLKLDSFNLQFPVTKAMFYPNYQTSNQDLLICA
NDMLRIFSINQDQRKQKLTQKSFLRHEKRRQAPVTAFDWSTIQPHLVIQSSYDTAISLWD
INREELEFTFQAHEKSINDVSFSPADPSIFASCASDGTVRVFDRRKIEISQQITQLDNQA
LRVQFNKFDPHQLAIISNNNNQIHIYDLRNVQHVLNLEKHEKEVNGIAWNPTCANQLLSV
GEDGNALIWEGGKAIMGYNCGEPADNCGWSELNKEWCSLIHGDILEILHV
NT seq 873 nt   +upstreamnt  +downstreamnt
atgcgtctagctatatgctcgtgtgatttggaacacaaaaactttgttgaagtaatctaa
tttaataaatagtcccagcaacttttaaaacttgactcatttaatctacaatttccagtt
actaaagcaatgttctatcctaattactaaacgagtaactaagacttactaatttgtgca
aatgatatgctgcgaattttctcaataaactaggattagcgtaagcagaaactgacatag
aaatcatttcttcgtcatgaaaagcggcgttaagcaccagttactgcatttgactggtca
acgatccagcctcatcttgtgatttagtcatcttatgataccgcgatttcactctgggat
attaaccgagaggaacttgagttcacatttcaagcacatgagaaatctataaatgatgtt
tcattttcacctgctgatccttctatatttgcttcttgtgcgtcagatggtactgttcgt
gtttttgataggcgaaagatagaaatttcataataaataacttaattagataatcaagca
ctgcgagtctaattcaataaattcgacccgcattaactggcgattatcagtaataacaat
aatcaaatacatatatacgatttacgaaatgtctagcatgttttaaacttagaaaagcat
gaaaaagaggtaaacggcatagcttggaacccaacttgtgctaatcaacttttaagcgtt
ggtgaggatggtaatgcactaatttgggaggggggaaaagcaatcatgggttacaactgt
ggtgaaccagcggacaattgtgggtggagcgagttaaataaggagtggtgcagcttgatt
catggggatattctagaaattttacatgtatga

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