Spironucleus salmonicida: 94299753
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Entry
94299753 CDS
T10465
Symbol
SS50377_25730
Name
(RefSeq) Coatomer alpha subunit
KO
K05236
coatomer subunit alpha
Organism
ssao Spironucleus salmonicida
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssao04131
]
94299753 (SS50377_25730)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssao04147
]
94299753 (SS50377_25730)
Membrane trafficking [BR:
ssao04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
94299753 (SS50377_25730)
Exosome [BR:
ssao04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
94299753 (SS50377_25730)
Exosomal proteins of bladder cancer cells
94299753 (SS50377_25730)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_ACSF4
PAN2_N
COPI_C
Motif
Other DBs
NCBI-GeneID:
94299753
NCBI-ProteinID:
XP_067762315
LinkDB
All DBs
Position
6:complement(<262965..>266312)
Genome browser
AA seq
1115 aa
AA seq
DB search
MPQLVFNLQTTRVKSVAFHPRRPWVLVACHDGFVELHDYVVGALVERFMAHSAPVRACAF
HESQPIFATGSDDRQIKLWDLENRKEIASLQGHTDYIRFIEFHKIRPWIVSASDDCSVKI
WNWQSRSCVGSCTGHKEFAMCAKFHPRDDLLATAGLDSTVRVWDLSKISRSVGLKKNIVE
KTLQQVLNLPQCTLSISINGESHTRGVNWVSWGENDSLYSSSDDYSVREWRLLRGKPEKD
EILGIDATLYTHSTLTGHSGNVNAVEVGKDNVVVSASSDGTIRVYEQKSKTYIGNLTCQD
YGIKPQNSMPTRFWCLSEHPKQSLWAAGHDQGLIIFNILDNQFIASTENKGQSYFIKNGI
LQSVNITNSNDQKYNKVTSQVARSGSFGAGKRVLIPQQLLNIGEPYPIVLAYDDGVNKTA
CTLMSLASQASVPFQTESNIIKINKTQVAFVINGQLNIGTPSTDGVAVISKIQLTKVSTF
LINGFESNECLLCYDKGDIDVVQIQDDIIIVKQQLSLPFSPRGFAFSTESFIGIRSFSSA
FILDRNYKMISSFKSSSQILSMCFGNLGRGFESSPRQTLVFTNATHVLYLCPSKDISGVI
TSLNKILFIQQVLGQQMLLLDQNCEPFAMEFDSRVCGLMTAIADDRTGDVQILLKRVKKS
NLGNALVGKLMSCCFNKEALQLVPESNILLKQKLSIDLGEIPDSVLPQFIPEYITECEKQ
QQWRKAFQYSSCEKQAYINVLNSSNEPLNYSNCSIQQRFNASMMMGDNKEFLITLHDCGL
TAAAQVFAESRNIMYEVLDADKLDEKLLKQGKALPIPMRKNQLKNWKINLPVEELQPIEE
IAMDPIENNGQWSDDKEEPEQLDHKLPEQQQKTNEQDNWSSEGSSHTDSNLPDLLNPNSQ
VFRLTGLSPTPVVKNIIEKAKNNNNQLQFDAKSTETLFKQAIDQTTQGNFTVSLESFKTA
FIQYKFLNLNQQNQYLSIAYIRGLMAEIMRQQVQEPRQLASLLLIFAQQSLLPQHRAKAL
KSACVKLKKNNFGNLARMCGYELQQVGRQLKSAEYEEKAQQYLHCKGGEEIVTDFDFSVN
FQTMKIVVCKFECQCCGSGGEEGQVCAVCEGGVVE
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgccatagcttgttttcaacctttaaacaaccagggttaaatctgttgcttttcatcct
cgtagaccatgggttttggtagcatgccatgatggttttgtagaacttcatgattatgtt
gtgggtgctttggttgaaaggttcatggcccattctgctcctgtacgagcatgcgcattc
catgaatcatagccaatttttgctactggatctgatgatcgctaaatcaaattatgggat
ttggaaaatcgtaaagaaatcgcttctttataaggccatacggattatattagatttata
gagtttcataaaattagaccttggatagtttcagctagtgatgattgtagtgtcaaaatt
tggaattggtagagtagaagttgtgtaggtagttgtactgggcataaagagtttgcaatg
tgtgccaagttccacccaagagatgatttgcttgctactgcaggattagattcaacggtt
agggtttgggatttatcaaagataagtcgttctgtaggtttgaagaaaaatatagtagaa
aagacgttataataagttttgaacttgccttaatgcacattatcgatatcaattaatgga
gaatctcacacaagaggtgttaattgggtatcttggggtgaaaatgattcactatattca
tcttcagatgattattctgtaagagaatggaggttgttaagaggaaagccagaaaaagat
gaaattctaggaatagatgctactttatatactcatagtacattgactggtcacagtggt
aatgttaatgctgtggaagtaggtaaagataatgtggttgtatcagcttcatctgatggt
actattagagtttacgaataaaagtctaagacatatattggaaatttaacttgtcaggac
tatggtattaaaccataaaattcaatgccaacacgattttggtgtttatctgagcatcca
aagtaatctttatgggcagcaggccatgattaaggacttattatttttaacattttagat
aattagttcattgcttcaactgaaaataaaggataatcatattttatcaaaaatgggatt
ttacaatccgtaaatattactaactcaaacgattaaaaatacaataaagttacatcatag
gtagcgagatctggatcattcggagctggaaaaagagtgttaataccataataactttta
aatataggcgaaccttatccaatagtacttgcatatgatgatggagtaaataaaacggca
tgcacattaatgtcgttggcttcttaagcctctgtaccttttcaaacagaatctaatatt
atcaaaataaataaaacgcaagtagcatttgttattaatggatagctaaacataggaact
ccttcaactgatggagtcgctgttattagtaagatttaattaactaaggtaagtacattt
ttaattaatggtttcgaatcaaatgagtgtctattgtgttatgataaaggtgatatagat
gttgtataaatacaagatgacattattattgtaaaataatagttatcattgccattctca
cctcgaggctttgcgttttctactgaaagtttcattggcatcagatctttttcgtctgct
ttcattttagatagaaattataagatgatttcgtcttttaaatcatcttcttagatttta
tctatgtgctttggtaatttaggtagaggttttgaatcttcaccaagataaacacttgtt
tttactaatgctactcatgttttatatctttgtcctagtaaagatatatctggtgttatt
acatctctcaacaagattttgtttatacaataggtattaggctaataaatgttattatta
gattaaaattgcgaaccttttgctatggagttcgattccagagtttgtggccttatgact
gctatcgcagatgatagaacaggggatgtttagatattactcaaaagagtaaagaagtcc
aatttaggcaatgctctagtaggtaagcttatgagttgttgctttaataaagaggcttta
taattagtacctgaaagtaatatattattaaaatagaagttaagtatcgatttaggtgaa
attcctgattcagtattaccataattcattcctgaatatattactgaatgtgaaaagtag
cagcagtggcgtaaagccttttaatattcaagctgtgaaaaacaggcttatataaatgtt
ttaaatagctcaaatgaaccattaaattatagcaattgttctatttagtaaagatttaac
gcatcaatgatgatgggtgataataaagagtttttaattacattacacgattgtggctta
actgcagcagcctaggtttttgcagagtctcgtaatataatgtatgaagttcttgatgca
gataaactagatgaaaaactattaaaatagggaaaagctctgccaataccgatgcgcaag
aactaacttaaaaactggaaaataaatcttccagtggaagaactctagcccattgaagag
attgctatggatccgattgagaacaacggctaatggtctgacgacaaggaagaaccagaa
taattagatcataaattaccagaataatagtaaaaaacgaatgaataagacaattggtct
tcagaaggctcttctcatacggatagtaacctcccagatttattaaacccaaattcttaa
gtatttaggctaactggattgtctccaacgccagtagtcaagaacattatcgaaaaagct
aagaacaataataattaactctaatttgatgcaaaatcgactgaaactctattcaagcag
gcgatcgaccaaacaacgtaaggaaacttcacagtatcattggaatctttcaaaacggcc
tttatttagtataaattcctgaatctgaatcaacaaaaccagtacctttctatcgcttac
attcggggccttatggccgaaatcatgcgctagcaggtgcaagaaccacgacagcttgca
tcactcctacttatttttgctcagcagtcgttgctcccacaacatagggcaaaagcgctc
aaatctgcatgtgtgaagctcaaaaagaataactttggtaatttagcgcgcatgtgcggc
tacgagttgcagcaggtcgggcggcagctcaaatctgccgagtacgaagagaaggcacaa
cagtatctgcactgtaagggcggcgaggagattgtcacggactttgacttttccgtcaat
ttccagacgatgaaaatagtagtatgcaagttcgagtgtcagtgctgcggcagcggcggc
gaggagggccaggtctgcgctgtgtgcgagggcggggtcgttgagtga
DBGET
integrated database retrieval system
