Spironucleus salmonicida: 94299754
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Entry
94299754 CDS
T10465
Symbol
SS50377_25731
Name
(RefSeq) LSM domain-containing protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ssao Spironucleus salmonicida
Pathway
ssao03018
RNA degradation
ssao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94299754 (SS50377_25731)
09123 Folding, sorting and degradation
03018 RNA degradation
94299754 (SS50377_25731)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssao03019
]
94299754 (SS50377_25731)
03041 Spliceosome [BR:
ssao03041
]
94299754 (SS50377_25731)
Messenger RNA biogenesis [BR:
ssao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
94299754 (SS50377_25731)
mRNA degradation factors
5'-3' decay
Lsm complex
94299754 (SS50377_25731)
Spliceosome [BR:
ssao03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
94299754 (SS50377_25731)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
LSM12_LSM
DUF3877
Motif
Other DBs
NCBI-GeneID:
94299754
NCBI-ProteinID:
XP_067762316
UniProt:
A0A9P8LNZ6
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All DBs
Position
6:complement(266542..266733)
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AA seq
63 aa
AA seq
DB search
MSDLNQFLNKFVAIYTKHGEYIEGQLNQFDQFNNILLVLAKSQGQSFKTLMVSFQQIDFI
GIQ
NT seq
192 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacttaaattagtttttgaataaatttgtggctatatataccaaacatggtgaa
tatattgaaggataattaaattagtttgattaatttaataacatcctattagtattggct
aaatcataaggataatcatttaaaacattaatggttagttttcagcaaatagattttatt
ggaatataatga
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