KEGG   Spironucleus salmonicida: 94299754
Entry
94299754          CDS       T10465                                 
Symbol
SS50377_25731
Name
(RefSeq) LSM domain-containing protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
ssao  Spironucleus salmonicida
Pathway
ssao03018  RNA degradation
ssao03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    94299754 (SS50377_25731)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    94299754 (SS50377_25731)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssao03019]
    94299754 (SS50377_25731)
   03041 Spliceosome [BR:ssao03041]
    94299754 (SS50377_25731)
Messenger RNA biogenesis [BR:ssao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     94299754 (SS50377_25731)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     94299754 (SS50377_25731)
Spliceosome [BR:ssao03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    94299754 (SS50377_25731)
SSDB
Motif
Pfam: LSM Hfq LSM12_LSM DUF3877
Other DBs
NCBI-GeneID: 94299754
NCBI-ProteinID: XP_067762316
UniProt: A0A9P8LNZ6
LinkDB
Position
6:complement(266542..266733)
AA seq 63 aa
MSDLNQFLNKFVAIYTKHGEYIEGQLNQFDQFNNILLVLAKSQGQSFKTLMVSFQQIDFI
GIQ
NT seq 192 nt   +upstreamnt  +downstreamnt
atgagcgacttaaattagtttttgaataaatttgtggctatatataccaaacatggtgaa
tatattgaaggataattaaattagtttgattaatttaataacatcctattagtattggct
aaatcataaggataatcatttaaaacattaatggttagttttcagcaaatagattttatt
ggaatataatga

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