Spironucleus salmonicida: 94299872
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Entry
94299872 CDS
T10465
Symbol
SS50377_25849
Name
(RefSeq) RNA helicase
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ssao Spironucleus salmonicida
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssao03009
]
94299872 (SS50377_25849)
Enzymes [BR:
ssao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
94299872 (SS50377_25849)
Ribosome biogenesis [BR:
ssao03009
]
Eukaryotic type
Pre-60S particles
Helicases
94299872 (SS50377_25849)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
P-loop_SecA
Cas3-like_C_2
GeBP-like_C
FMN_bind_2
Sigma70_r2
Motif
Other DBs
NCBI-GeneID:
94299872
NCBI-ProteinID:
XP_067762432
LinkDB
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Position
6:complement(<447274..>449046)
Genome browser
AA seq
590 aa
AA seq
DB search
MSSFSDLNLNPKLLAQFTEKFAFTQPKPIQAQIIPNFHNEFPLIFQAETGSGKTLAYVLP
ILSYYYNENTDFALSTTPKVLFLAPTRVLARQIFEIITLFDLPISSFIGGESHQNTAFFV
VATPGKALFEEELFKKLDFLVLDEADRLVQMEDCRKFLHTQKKAKLVMSSATVEGIKMLG
KIVKLTTDTNEFLKPNSLQISYSIVPIAQKYEFLVDFIRKFDKTAGKLLIFTLTCAGSRF
IAEFLKKTLKTEKIFNLNGKQHSQVQVKNLNRFMQSTDFAILITTDIAARGLDVESVSFV
LQFDPPQRLETLVHRAGRAGRNTRDGKCLILVDNDEIDLLEMLQNRGIFMKKEEEMEQIQ
RNFSDSKKIQFYKKELKKQRKSLEIETQKGVGKSILILNAQIKELEEKISVLEAEEAEFN
KQKMEIFELPSSKILREMQCEDRGIFDLAQEAFIAMVRAYQEYEMKYIFDFKKVDLGQLA
MSMGLLKLPSMKELKSGFIWFKGSDVDINSINYLDSSKEKLRQERKIQREEKVEKQIKEE
VKVVQAPTKKIEPLQKPTKVFNNQKFSAEYDLLQKFKKGYITEEELEKLL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattttcagatctcaatttaaacccaaaattattagcccagtttactgaaaaa
tttgcattcacctagccaaaaccgatacaggcctaaattatcccgaatttccataacgaa
tttccgctaattttttaagctgaaactggctcaggcaaaacactcgcgtatgtccttccc
attctttcctactattacaacgaaaacaccgattttgctctatcgaccaccccgaaagta
ttatttctagcgcccacgcgcgtcctcgcgcgctagattttcgaaattatcacacttttt
gacctgccgatttcctctttcattggcggcgagtcgcaccaaaacaccgcatttttcgtc
gtagcgacgcccggaaaggcccttttcgaggaggaacttttcaaaaaactcgactttctg
gtactcgacgaagcggaccgtctggtgcaaatggaggactgccgcaagttcttgcacacg
cagaaaaaggccaaactcgttatgtcgagcgcgacggtcgagggcatcaaaatgctcggc
aaaatcgtcaaactgacgacggatacgaacgagttcttgaaaccgaactcgctccaaatc
tcatactcgatcgttccaatcgcgcaaaagtacgaatttctcgtcgatttcatccgaaaa
ttcgacaaaactgcagggaaacttcttattttcacgcttacgtgcgcggggagccgtttc
atcgcagaattcctcaaaaagacactgaaaacggaaaaaatcttcaatttgaacggtaag
cagcacagccaagtttaagtcaaaaacttgaaccgtttcatgcagtcgaccgatttcgcg
attttgataacaactgatatagcggcacgcggcctggacgtcgaatcggtaagttttgtg
cttcaattcgaccctccgtagcgtctggaaacgctggttcaccgggcaggccgcgcgggg
cgcaatacacgggacggaaaatgcttgattttggtcgataatgatgagattgatctgttg
gaaatgcttcaaaatcgtggaattttcatgaaaaaagaggaagaaatggagcaaatataa
cgcaattttagcgactcaaagaagatataattttacaaaaaagaactcaaaaagcagaga
aaaagtttggaaatcgagacccaaaagggtgtcggaaaaagtattttaattctaaacgct
taaatcaaggaattggaagaaaaaattagtgttttagaagcagaggaggctgagtttaat
aaacaaaaaatggagatattcgagctcccatctagtaaaatcttacgtgaaatgcagtgt
gaagatagaggaatttttgacttagcttaagaagcgtttattgccatggtgagagcttat
taagaatatgaaatgaagtacattttcgacttcaaaaaagtagatttggggtaactagca
atgtctatgggactgttaaagctaccgagtatgaaggaattaaaaagtggatttatttgg
tttaaaggtagcgatgttgacataaattctataaactatttagactcatctaaagaaaaa
ttaagataggaaagaaaaatataaagagaagaaaaagtagaaaagtagatcaaagaagaa
gttaaggtagtgcaggctccaactaagaaaattgagcctctttaaaaaccaactaaagta
ttcaacaattagaagtttagtgcagaatacgaccttttgcaaaaatttaagaaagggtat
attacagaagaagagcttgaaaagttattgtga
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