Spironucleus salmonicida: 94299896
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Entry
94299896 CDS
T10465
Symbol
SS50377_25873
Name
(RefSeq) Replication factor C, subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
ssao Spironucleus salmonicida
Pathway
ssao03030
DNA replication
ssao03410
Base excision repair
ssao03420
Nucleotide excision repair
ssao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
94299896 (SS50377_25873)
03410 Base excision repair
94299896 (SS50377_25873)
03420 Nucleotide excision repair
94299896 (SS50377_25873)
03430 Mismatch repair
94299896 (SS50377_25873)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssao03032
]
94299896 (SS50377_25873)
03036 Chromosome and associated proteins [BR:
ssao03036
]
94299896 (SS50377_25873)
03400 DNA repair and recombination proteins [BR:
ssao03400
]
94299896 (SS50377_25873)
DNA replication proteins [BR:
ssao03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
94299896 (SS50377_25873)
DNA Replication Termination Factors
ELG1-RFC complex
94299896 (SS50377_25873)
Chromosome and associated proteins [BR:
ssao03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
94299896 (SS50377_25873)
DNA repair and recombination proteins [BR:
ssao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
94299896 (SS50377_25873)
Check point factors
HRAD17(Rad24)-RFC complex
94299896 (SS50377_25873)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
DNA_pol3_delta2
AAA_22
Rad17
AAA_14
AAA_33
DUF815
nSTAND_NTPase5
AAA_16
AAA_2
RuvB_N
AAA_7
T2SSE
ATPase_2
TniB
AAA_5
AAA_11
ResIII
AAA_29
AAA_lid_RFC1
AAA_23
AAA_30
RCF1-5-like_lid
RNA_helicase
AAA_28
nSTAND3
DUF3802
Mg_chelatase
TsaE
IstB_IS21
nSTAND6
Motif
Other DBs
NCBI-GeneID:
94299896
NCBI-ProteinID:
XP_067762456
LinkDB
All DBs
Position
6:478992..480011
Genome browser
AA seq
339 aa
AA seq
DB search
MIIICYLSFYQSTPLTSLMTNTWTELHRPKKLSEIAHQPQVVQSLETFLKSNDIPNLLFF
GPQGTGKTTAIHAFARELFGDQYRQRIFEINASSERGVNSIRTRVKPLSQLSLSSGIRLI
ILEEADALTRDAQAALRRILEDSAATTRVCLLCNYASQIIAPLASRCAKFRFFPLPQSVI
SQNLLKIAKLQATQIDEIAADQISENARGDMRKAVTDLQMHSLIGRGIVDLQTCRLIEKV
QGGVDNQILNQLFDAIIDKNVAEIEFKEIVNRIFESQISPQELVFALFDKFLNSEEISDR
FRQVCAEQYCKFGVVCAKRGTEKLALSKFLYGVRCACFK
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgattattatatgctatttatcattttattaatccactccactaacttctctcatgacg
aatacttggacagaacttcacaggccaaaaaagctatcagaaatagctcattaacctcaa
gttgtgcagtctctagaaacatttcttaaatcaaatgatataccaaacttactctttttt
ggtccataaggaaccggaaaaacaacggcaatacatgcattcgcccgtgaactctttggc
gattaataccgttagagaatatttgaaattaatgcatcttcagagcgtggtgtaaactca
attagaacacgtgtgaagccactttcgtagctatcattatcaagtggaatacggctaata
attctggaagaggcagatgcacttacacgtgatgcttaggcagcattacgaagaatttta
gaagactcagcggccaccacacgagtctgcctcttgtgcaattatgcatcccaaattatc
gctcctttggcgtctagatgcgctaagtttcgtttcttccctcttccataaagtgtaatt
tcttagaatttacttaaaattgcaaagttacaggctacataaatagacgaaattgcagca
gattaaatcagcgaaaatgcacgtggtgatatgagaaaagccgttacagacctttaaatg
catagcttaatcggtcgtgggatagttgatttacaaacctgcagattaatcgaaaaggtt
taaggtggagtggataatcaaattctgaattaattgtttgatgctataattgacaaaaac
gtagcagaaatagagtttaaagagatagtaaatcgcatcttcgagagtcaaatttcacct
taggaactggtttttgcactttttgacaagttcttaaattcggaggaaatcagcgacagg
ttcaggcaagtttgtgcagagcagtattgcaagtttggagtggtttgtgcaaagcgggga
actgaaaaattggctctgagcaaatttctctatggggtgcgctgtgcttgttttaagtga
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