Spironucleus salmonicida: 94300138
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Entry
94300138 CDS
T10465
Symbol
SS50377_26115
Name
(RefSeq) LSM domain-containing protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ssao Spironucleus salmonicida
Pathway
ssao03018
RNA degradation
ssao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
94300138 (SS50377_26115)
09123 Folding, sorting and degradation
03018 RNA degradation
94300138 (SS50377_26115)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssao03019
]
94300138 (SS50377_26115)
03041 Spliceosome [BR:
ssao03041
]
94300138 (SS50377_26115)
Messenger RNA biogenesis [BR:
ssao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
94300138 (SS50377_26115)
mRNA degradation factors
5'-3' decay
Lsm complex
94300138 (SS50377_26115)
Spliceosome [BR:
ssao03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
94300138 (SS50377_26115)
Complex C
U2 snRNP components
94300138 (SS50377_26115)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
94300138
NCBI-ProteinID:
XP_067762688
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All DBs
Position
6:complement(894626..894856)
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AA seq
76 aa
AA seq
DB search
MLFDNLLIENRIATVQLKSGMYFTGNLIGADTYMNIRLNNLTFQKHEDYGYLSNLKEIFI
RGDKIKFITFENKDMS
NT seq
231 nt
NT seq
+upstream
nt +downstream
nt
atgctatttgacaatttactaattgagaatcgcatcgcaactgtataactcaaaagtggt
atgtattttacaggaaatttgataggtgctgatacatatatgaatatccgcttgaataac
ttaacgttctaaaaacacgaagattatggctatttatcgaatctaaaagaaatattcatt
cgtggagacaaaattaagtttattaccttcgaaaacaaagatatgagttga
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