Spironucleus salmonicida: 94300887
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Entry
94300887 CDS
T10465
Symbol
SS50377_26864
Name
(RefSeq) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ssao Spironucleus salmonicida
Pathway
ssao03030
DNA replication
ssao03410
Base excision repair
ssao03420
Nucleotide excision repair
ssao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
94300887 (SS50377_26864)
03410 Base excision repair
94300887 (SS50377_26864)
03420 Nucleotide excision repair
94300887 (SS50377_26864)
03430 Mismatch repair
94300887 (SS50377_26864)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssao03032
]
94300887 (SS50377_26864)
03400 DNA repair and recombination proteins [BR:
ssao03400
]
94300887 (SS50377_26864)
Enzymes [BR:
ssao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
94300887 (SS50377_26864)
6.5.1.6 DNA ligase (ATP or NAD+)
94300887 (SS50377_26864)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
94300887 (SS50377_26864)
DNA replication proteins [BR:
ssao03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
94300887 (SS50377_26864)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
94300887 (SS50377_26864)
DNA repair and recombination proteins [BR:
ssao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
94300887 (SS50377_26864)
NER (nucleotide excision repair)
Other NER factors
94300887 (SS50377_26864)
MMR (mismatch excision repair)
Other MMR factors
94300887 (SS50377_26864)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
94300887
NCBI-ProteinID:
XP_067761355
LinkDB
All DBs
Position
7:<298511..>300634
Genome browser
AA seq
707 aa
AA seq
DB search
MSFLKNPIILKTKKAQEPIQKPLDQPLIQSSNFSIICAFLFQIESTTKRLEKLEIFTKLL
IQLSITAPSDITKLLLLLSNQVREPWADGVSFLSCGEQIVRKAISDVFSVKTDEIKQSLQ
TTGDLAISCEIFKKRQPKQFIQSKKLILDAVFSNFLQIADCAGNNSSYDRQTIIKKLLLA
GSGIENRYIVRFLLGKNRLGLQRKTILFALSDFLCYFKLKFKYIPTENLQKHLDSSWGKI
AENIVTSKIIDDLTREDDDDEDLCDDTSLNQTGSVDEILEKVKQQEHEYSYTNLRQLAYI
EVSKAFAKVPSLTFLAENLTQLNTVKITPFIPILPMLAKPVSSFEEILTSNLNFFCEFKY
DGFRAQIHSKNGKMQIFSRSQENMSERFPDVLISVQNAAKHPDFVIDGEIVPVDENGQIL
PFQFLSRRLKIFDSSQNAAKIVFFAFDLMSLNGVEMLGAPLKTRRFLLENCFNSQNLFQL
SSSTLCSNIKEIQDLLSEAITARTEGLIIKSQASRYAPDRRSRHWTKLKKDYLENVGDSF
DLVPVAGWYGKGKRAGVIGSYLLAARNGDEFQTVTCIGTGMSDDFLQDQSWNRMDSQPNN
VRVSERYQGTQGPDFWINPEESQVWEVKVANLSLSLMHTCYVTNGRGIAARLPRLIRNRD
DKRVSECTTAQFVFDRFNAQPDRGGVDEEDDFVVKDSSESSLDDFEE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcattccttaaaaatcctatcatcttgaaaacaaaaaaggcttaagaacctatttaa
aagccactagactaaccacttatataatcttctaatttcagcatcatctgtgcattccta
ttctaaattgagtccacgacaaaacgcctcgaaaaattagaaatcttcactaagttgcta
atataactttcaattacagcaccatccgatataactaaattattgttgctactgtccaac
taggtccgtgagccttgggctgatggagtttccttcctttcctgcggagagtagatcgtc
agaaaagcaatttctgatgttttttcagttaaaacggacgagataaaacaaagcttataa
accactggtgacctagctatatcttgcgaaatattcaagaaacgacaaccaaaacagttt
attcagtcgaaaaaactaatactggatgcagtgtttagtaacttcctctaaattgctgat
tgtgctggtaataactcatcatatgataggtagacgatcattaaaaagttgctattagct
ggatctggaatcgaaaatcgttatattgtacggtttttactgggaaaaaatcgactaggg
ttatagcgaaagacaattttatttgcactttcagatttcttatgttacttcaagttaaaa
tttaaatatataccgactgaaaatctccagaagcacctggatagttcatgggggaaaata
gcagagaacatcgttacgagtaaaatcatagacgaccttacacgagaagatgacgatgat
gaggatttgtgcgatgataccagtttgaattaaactggttctgtagatgaaattctcgaa
aaagttaaatagcaagagcatgaatattcttacactaatctgcgttaattagcttatatc
gaggtgtcaaaagcctttgccaaagtgccttctttaacatttttagctgaaaatttaaca
cagcttaacactgttaaaatcacaccattcatccccattctcccaatgctagcgaaaccg
gtttcatcttttgaagagattttaacttctaatttaaacttcttctgtgagttcaaatac
gacggattccgagcctaaattcattccaaaaacggtaaaatgcaaattttcagccgctcc
caggagaacatgtcagagcgcttcccagacgtcctgataagcgtctagaacgcagcgaaa
cacccagatttcgtaatcgatggtgagatagttccagtggacgaaaatggataaattctt
cctttccagttcctttctcgccgtcttaaaatcttcgattccagtcaaaatgcggcaaaa
atcgtcttttttgccttcgatttaatgagcttgaatggcgtggaaatgctcggtgcgcca
ctgaaaacgcgcagatttctgctagaaaattgttttaactcctagaatctgttttaactg
tcgagttcgacattatgttcaaatataaaagagatataggaccttttgagtgaagcgata
actgcgcggacggaagggctaataattaagtcataagcgagccgctatgctccagataga
cgaagtaggcactggacaaagcttaaaaaagactatttagagaatgtgggcgattctttc
gatctggtgccggtggctggttggtacggcaaggggaaacgtgccggtgtaattgggagt
tatttgctggccgcgcgtaatggtgatgagttttaaacggttacatgtatcggaactgga
atgtctgacgactttctgcaggattaaagttggaatcggatggatagctagcctaacaat
gttcgtgttagcgagcgctatcagggaacgtaaggacctgatttctggataaatccagaa
gaatcataggtttgggaggtcaaagttgcgaatctatcgctttcattgatgcacacgtgt
tatgtgactaatgggcgtgggattgctgcccggttgccacggctgattagaaatcgagat
gataaacgtgtttctgaatgcacaactgcataatttgtgtttgacagatttaatgcacag
ccagatcgtggcggtgtggacgaggaggatgattttgtcgttaaagatagctccgaaagt
agtttagatgatttcgaggagtga
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