Spironucleus salmonicida: 94301345
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Entry
94301345 CDS
T10465
Symbol
SS50377_27322
Name
(RefSeq) Helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ssao Spironucleus salmonicida
Pathway
ssao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94301345 (SS50377_27322)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssao03019
]
94301345 (SS50377_27322)
03041 Spliceosome [BR:
ssao03041
]
94301345 (SS50377_27322)
03009 Ribosome biogenesis [BR:
ssao03009
]
94301345 (SS50377_27322)
03016 Transfer RNA biogenesis [BR:
ssao03016
]
94301345 (SS50377_27322)
Enzymes [BR:
ssao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
94301345 (SS50377_27322)
Messenger RNA biogenesis [BR:
ssao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
94301345 (SS50377_27322)
Spliceosome [BR:
ssao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
94301345 (SS50377_27322)
Complex C
U4/U6.U5 tri-SnRNP related factors
94301345 (SS50377_27322)
Ribosome biogenesis [BR:
ssao03009
]
Eukaryotic type
Pre-60S particles
Helicases
94301345 (SS50377_27322)
Transfer RNA biogenesis [BR:
ssao03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
94301345 (SS50377_27322)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
DSHCT
Helicase_C
DEXQc_Suv3
MTR4_beta-barrel
AAA_22
Motif
Other DBs
NCBI-GeneID:
94301345
NCBI-ProteinID:
XP_067761801
LinkDB
All DBs
Position
7:<919107..>922454
Genome browser
AA seq
1115 aa
AA seq
DB search
MEFDLLTTPAAMSTAESRPLPTIIEVPQPIPANPLKAIRHSVVFPPETTPPASLSADIFT
LPPVANPAKTFPFTLDPFQEKAIAALNRGESVMVSAHTSAGKTAIAEYAISICVQRGQKV
AYTSPIKALSNQKFRDLSLTYDSVGLLTGDSTVNKQAQILVMTTEILRNMLQQGGELLRE
LGCVVFDEVHYMRNAERGVVWEDCISQLNSKMTFVFLSATIPNAAEFAGWVCSIHGKPMH
VIYTEFRPVPLQFCICPIGGTEVFHAFSSDDRQLNTANIAKARQMLPFQGGKQGGMTGKL
KQKMMNETILTCLKMLKSKQILPVIVFSFGKARCEELAQMLLKEGQIGSLLSQSQQDAVE
LIFSAALREIDPADQQLKQIVQARQLLLRGVAVHHSGLLPFVKEVTEILFQEDLVKVIFV
TETFAMGLNLPARCVVFTDLQKYDGQQNRYVQSGEFIQMAGRAGRRGLDTQGVVISFFAS
QDDCSASLDVMRGGAEALNSSYKIGYSQLVNYLRIEGFSAEQAISRSFLQFQRDFRLPRC
ANSLYQIEIALLQFEKQFSDAATGLALPETLQFLDLEELKFREMLKLMEMGREPQLEKQL
VSRLVRGRILQISGDGQNFGPCVLLGSSVQGGALFLDVLAPLVAPKQYNAAKRSSEPAAV
LNSCKSRDFAPSDRFVEDLLQNSEFSSFLSPKTADLDDILAENASNLVGLSDSELCRPEF
KCCETVSHEINQKMNNLTSNCVFRFIMERKNVHYQTILFDKANFVPIVFRVPISCVSEIS
TVYVKNLPVSAADYDDRKLILTKFMAVLVQLFERQKGDLEEVFVFRDDIIPKLQFDQLEN
INVKYVEQQQRVQKIQELLKTNFYSYYKYFNDYYIKSGNIHEILLQILKLKRRQNLLSNE
LKSGSKVLVEDLKNKKLLLQHLKYFDFESQTALEKGKIASKINAVNELIVVEAIFGNLFS
DASVPVFCGVVCALLGERVRGQEAALSAELEAPLQRLTDVVSGLLDACAVYGVELETGIT
RSDELVDRNAAQAAFLWADQRSLQEILDEIPSLFEGSVVRMFRRLVTGLEQVQEAVAGWG
DGALSTKCADAIKVVNRGLVRADSLYIIDEQPQED
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgaccttctgacgacaccagccgcgatgagcacagcagaaagcagaccacta
ccgaccataatcgaagtcccatagccgatccccgccaacccgctgaaggcgatccgccac
tcggtcgtcttcccgccagaaacgacgccaccggcctcgctaagtgccgatattttcacg
ctaccaccggtagcaaatcctgccaaaaccttcccgttcactctagatccgttccaggag
aaggccatcgcggcgctcaaccgcggcgagtccgtgatggtttccgcacatacatccgcc
gggaaaacggccatcgcggagtatgccatctcgatctgcgtgcagcgcggccagaaagtc
gcatacacttccccaattaaggcgctttcgaaccagaagttcagagacctctccctgacc
tacgacagcgtgggcctgctcacgggcgactccaccgtgaacaagcaggcccagatcctt
gttatgacgacagaaatcctacgcaacatgctgcagcagggcggtgagctactgcgcgag
cttggctgcgtcgttttcgacgaagtgcactacatgcgaaacgcagagcgtggtgtggtc
tgggaggactgcatcagccagctgaacagcaaaatgacgttcgttttcctctctgcaacg
atccccaacgccgcagaattcgcaggctgggtctgcagcatccacggtaagcccatgcac
gtcatttacaccgaatttagacccgttccgctccaattttgcatctgcccaatcggcgga
acggaggtcttccacgccttcagctccgacgaccggcagctgaacaccgcgaacatcgca
aaggcgcgccagatgctgccgtttcagggcggaaagcagggcggaatgaccggcaaattg
aagcagaaaatgatgaatgagacgattctgacgtgcctgaaaatgctcaaaagcaagcaa
atcctgcccgtaatcgtcttcagcttcggcaaggcgcgctgcgaggagctcgctcagatg
ctgctaaaagagggccaaatcggctccctgctgtcgcagtcgcaacaggatgccgtggag
ctcattttcagcgccgcgctgcgcgaaatcgacccagcggaccagcagctgaagcagatc
gtccaggcgcgccagctgctgctccgtggcgtcgctgtgcaccattctggcctgctgccg
ttcgtgaaggaggtgaccgaaatcctctttcaggaggacctcgtaaaggtcattttcgtc
acggaaacgttcgcgatgggcctgaatttgcctgcgcgctgcgtggtcttcacggacctg
cagaagtacgacggacagcaaaatcgctacgtgcaatcgggcgaattcatccaaatggcg
ggccgcgcggggcgccgcgggctggacacgcagggggtcgtgatttcgttcttcgcgagc
caggacgactgcagcgcgtcgctggacgtcatgcgcggcggcgctgaggcgctgaattcg
agctacaaaatcggctactcgcagctcgtgaactatttgcgaattgagggtttctcggcc
gaataggcgatttctaggagcttcctgcagttccagcgcgatttccggcttccgcgctgc
gcgaattcgttatatcagatcgaaatcgcacttttgcagttcgaaaagcagttttctgac
gccgccacgggccttgcgctgccggagacgctccaattcctcgatttggaggaattaaaa
tttcgcgaaatgctgaaattgatggaaatgggaagggagccgcagctcgaaaagtagctg
gtttcgcgtctcgtgaggggtcgaattttgcaaatttctggcgacgggcagaatttcggg
ccctgcgttttgctgggaagcagtgtctagggcggtgcgctgttcctggacgttctggcg
ccgctggtggcgcctaagcagtacaacgcagcgaagcggtcgagcgagcccgcggcggtg
ctgaattcgtgcaaatcgcgcgatttcgcgccctctgaccgcttcgttgaggatttgctg
caaaatagcgaattttcgtcgtttttgagccccaaaacggccgatttggacgacattttg
gccgaaaatgcttcgaatttggtcggtctgagcgactcagagctgtgccgcccggagttc
aaatgctgcgaaacggtgagccacgaaatcaattaaaaaatgaacaatttgacttcaaat
tgcgtttttcgctttattatggagcggaaaaatgtgcattattaaacgatattattcgat
aaagcaaatttcgttccaattgtctttagagttccgatttcgtgtgtgtcggaaatcagc
accgtttacgtgaagaatctgccggtttcggctgcggattacgacgataggaagctcatt
ttgacgaagtttatggccgttttggtgcagcttttcgagcgccagaaaggcgatttggag
gaggttttcgtgttcagagacgatataataccgaaattgcagttcgatcaactcgaaaat
ataaatgtgaaatatgtcgaataataatagcgagtatagaaaatttaggaacttttaaaa
acaaatttctacagttattacaaatattttaatgattattatataaaatcaggcaatatt
catgaaattctactgtaaattttgaagctcaaaaggcggcaaaatctgctctccaacgag
cttaagtcaggctccaaggtcctggttgaggacctgaagaacaagaagctgctcctgcag
cacctgaaatacttcgatttcgagtcgcagaccgcgctcgaaaagggcaaaatcgctagc
aaaatcaacgccgtgaacgagctgatcgtcgtggaggcgatcttcgggaacttgttttct
gacgcgtctgtcccagtcttctgcggtgtcgtctgcgcgctgctgggcgagcgcgtgcgc
ggccaggaggcggctctgagcgccgagctggaggccccgctgcagcgacttacggatgtc
gtttctggcctcctggacgcctgcgccgtctacggcgtcgagctcgaaacgggaatcacg
cggagcgacgagctcgtggaccgcaacgccgcgtaggctgcatttctgtgggccgattag
cgtagtttgcaagagattctggacgaaattccgtcgcttttcgagggcagtgtcgtccgg
atgttccggcggctcgtgacgggcctggagcaggtccaggaggcggtggccggctggggt
gacggtgcgctgagtactaagtgcgctgatgcaataaaagtcgtaaatagggggctggtg
cgcgccgattcgctttacatcatcgatgaacagccgtaggaagattga
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