Serratia sarumanii: SSARUM_000244
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Entry
SSARUM_000244 CDS
T10280
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssar Serratia sarumanii
Pathway
ssar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SSARUM_000244 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssar03021
]
SSARUM_000244 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssar03400
]
SSARUM_000244 (rpoC)
Enzymes [BR:
ssar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SSARUM_000244 (rpoC)
Transcription machinery [BR:
ssar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SSARUM_000244 (rpoC)
DNA repair and recombination proteins [BR:
ssar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SSARUM_000244 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WGZ63194
LinkDB
All DBs
Position
263116..267339
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLNGSKEAERVYRAG
LASLHARVKVRITEDVKNAEGEWTSQTSIIDTTIGRAILWMIVPKGLPYAIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKACDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGEEVNGGETVANW
DPHTMPVISEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGEDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGSEFLEGEQAEVSRVKIANRQLEAEGKIPATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcctcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagagcgtgacggccttttctgcgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcttcgccgactgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggtggtcgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
accgaagagcagtatctggacgcgctggaagagtttggtgacgaattcgacgccaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgcaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtgcagtccggtaacaaaccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtcctctggttccgctggatggcggtcgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccggacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaaacgcgttgactactccggccgttccgtaatcaccgtaggtccatac
ctgcgcctgcatcagtgcggtctgcctaaaaagatggcgctggagctgttcaaaccgttc
atctacggcaagttggagctgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagccgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggccgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcccctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgcgactgtgttaacgcc
aagggcgaaggcatggtgctgaacggttccaaagaagctgagcgtgtttaccgcgccggc
ctggcgtctctgcatgcgcgcgttaaagtgcgtatcaccgaagacgtcaaaaacgccgaa
ggcgaatggacttctcagaccagcatcatcgacaccaccatcggccgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtacgcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcccgttccggcgcttccgtaggt
atcgacgacatggttatcccggccaagaaagcggagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggttaccgccggcgaacgctacaac
aaagtgatcgatatctgggctgcagcgaacgaacgcgttgcgaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaagtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggttgtgaccgaagacgactgtggcacccacgacggcatc
ctgatgactccggttatcgaaggtggcgacgtgaaagagccgctgcgtgaacgcgttctg
ggccgtgtgacggcagaagacgtcctcaagccgggtacggcggacattctggtgccacgc
aacaccctgctgaacgagaaggcgtgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtggtgagctgtgaaaccgactttggtgtgtgcgcaaactgctacggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaagggtagcatcaagctg
agcaacgcgaagttcgttatgaacgctgcgggcaagctggtgatcacctcgcgtaacacc
gaactgaaactgatcgacgaattcggccgtaccaaagaaagctacaaggtgccttacggt
gccgtgatgggcaaaggcgacggtgaagaagttaacggcggcgaaaccgtcgctaactgg
gatccgcacaccatgccggtcatcagtgaagtcagcggcttcattcgcttcgcggacatg
gtcgacggccagaccattactcgccagaccgacgaactgaccggtttgtcctctctggta
gttctggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgacgctcagggcgaagacgtattgatcccaggcaccgatatgcctgctcaatacttc
ctcccgggcaaagcgatcgttcagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgccgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatctctccgctg
gacggcagcgacgcttacgaagagatgattccgaaatggcgtcagcttaacgtgttcgaa
ggcgaagtggtggaacgtggcgacgtcgtatccgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggcgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttagcgctggtggctccgagttcctggaaggcgagcaggct
gaagtgtctcgcgtcaagattgccaaccgtcagctggaagctgaaggtaagatcccggca
accttctcgcgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgctgcatcgttccaggaaacgacgcgcgttctgaccgaagctgccgtagccggcaag
cgtgatgaactgcgtggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgcatgcgtcgccgtgctcagggtgaagcgccggtt
gttccgcaagtcagcgcggaagaagcgacggctaacctggccgagctgctcaacgcaggc
ctgggcggcagcgacgacgagtaa
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