Serratia sarumanii: SSARUM_000392
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Entry
SSARUM_000392 CDS
T10280
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssar Serratia sarumanii
Pathway
ssar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSARUM_000392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssar03019
]
SSARUM_000392
03009 Ribosome biogenesis [BR:
ssar03009
]
SSARUM_000392
Enzymes [BR:
ssar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SSARUM_000392
Messenger RNA biogenesis [BR:
ssar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSARUM_000392
Ribosome biogenesis [BR:
ssar03009
]
Prokaryotic type
rRNA helicases
SSARUM_000392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
WGZ63327
LinkDB
All DBs
Position
424261..426183
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AA seq
640 aa
AA seq
DB search
MTTEFETSFADLGLSAPIISALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLQADLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDLYRALLTKLQPEEELDME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRRGDRRDSRDSRDGDRPRRERRD
VGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEIL
NHFTRTRILNKPMNMQLLGDAQPFERRERRDGGNGGERRGNGRPFNGERREGGPRRSFGE
RREGGNGGERRGGNYNRDGKPAPRRDDGAPAAPRRRFGDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgagtttgaaacctcttttgctgatctggggctgtctgctccaatcatttcc
gccctgaacgatctgggctatgaaaaaccatctccgatccaggctgagtgtattcctcac
ctgttgaacggccgcgacgtgctgggcatggcacagaccggtagtggtaaaactgcagcg
ttctcgctgccgctgctgcacaacctgcaggcagacctgaaagcacctcagatcctggtg
ctggcaccgacccgcgaactggcggttcaggttgccgaagcgatgaccgatttctccaaa
cacatgaacggcgtcaacgtggtagccctgtacggcggccagcgttacgacgtgcagctg
cgcgctctgcgccagggcccgcaaatcgttgtgggtaccccaggccgcctgctggaccac
ctgaaacgcggcaccctgaacctctctaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggctgagatcccggct
gaacatcagaccgcgctgttctctgccaccatgccggaagcgatccgtcgcatcacccgc
cgcttcatgaaagagccgcaggaagtgcgcatccaatccagcgtgaccacccgtccggac
atcagccagagctactggtcggtgtacggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagctgaagactttgacgcggcgatcatcttcgtccgtaccaagaacgcgaccctg
gaagtggccgaagcgctggagcgcagtggttacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagaccctggagcgcctgaaagacggtcgtctagatatcctg
atcgcgaccgacgttgcggcccgtggcctggacgttgagcgcatcagcctggttgtcaac
tatgacatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcg
ggccgcgccggccgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
attgaacgcaccatgaagctgaccatcccggaagtggaactgccgaacgcagaactgctg
ggtgagcgtcgtctggccaagttcgccgcaaaagttcagcagcagctggaaagcagcgat
ctggatctgtaccgcgcactgttgaccaaactgcagccggaagaagagctggatatggaa
accctggccgcagcgctgctgaaaatggctcagggcgaacgtccgctgatcctgccgccg
gatccggtcttcaaaccgcgccagcgccgcgagttcaacgaccgtgacgatcgtcgcggc
gaccgtcgcgacagccgcgatagccgtgacggcgaccgtccgcgtcgcgaacgtcgtgac
gttggcgaaatgcagctgtaccgcatcgaagtgggccgtgacgatggcgtagaagtccgt
cacatcgttggcgcgatcgctaacgaaggcgacatcagcagccgttacatcggtaacatc
aagctgttcgcgtcccactccaccatcgagctgccaaaaggcatgccgggcgagatcctg
aatcatttcactcgcacccgcatcctgaacaagccgatgaacatgcagctgctgggcgat
gcacagccgttcgaacgccgcgagcgtcgtgacggtggcaacggcggcgagcgtcgcggc
aacggtcgtccgttcaacggcgaacgtcgcgaaggcggcccacgtcgttccttcggcgaa
cgtcgtgaaggcggcaacggcggcgagcgtcgtggcggtaactacaaccgtgacggcaaa
ccggcgccacgccgtgatgatggcgcacctgctgcaccacgtcgtcgtttcggcgacgcg
taa
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