Serratia sarumanii: SSARUM_000721
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Entry
SSARUM_000721 CDS
T10280
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ssar Serratia sarumanii
Brite
KEGG Orthology (KO) [BR:
ssar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssar03009
]
SSARUM_000721 (rlmD)
Enzymes [BR:
ssar01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SSARUM_000721 (rlmD)
Ribosome biogenesis [BR:
ssar03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SSARUM_000721 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
RrnaAD
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
Methyltransf_11
CMAS
FtsJ
Methyltransf_23
Methyltransf_4
DHDPS
Ribosomal_L22
DOT1
Motif
Other DBs
NCBI-ProteinID:
WGZ63642
LinkDB
All DBs
Position
785927..787276
Genome browser
AA seq
449 aa
AA seq
DB search
MAQFYSPKRRVTTRQSSQIFTVTVSDLDPFGQGVARHDGKAVFVPGVLPGEQAEIQLTED
KRQFAKGKLKRLLSRSPQRVAPRCPHFGVCGGCQQQHADEALQQQSKAAALVRMIARETG
VTPQQEPVIAGPEYGYRRRARLSLAWQPKLQRLMMGFRQAASSELVAVEHCPVLRPELER
LLAPVRACLSGLQAVRRLGHVELVLADNGPLLVLRHLDALKEADRQALLAFGERENLAVY
LAPDSDRVEKLCGDTPYYQVDGLRLDFSPRDFIQVNDAVNQQMVAQALEWLDIQPNDRVL
DLFCGMGNFTLPLARRAAAVVGIEGVATLVANGQYNAHKNKLNNASFFHENLEDDVARQP
WAAQGFDKVMLDPARAGAAGVMSHIVKLAPARVVYVSCNPTTLARDSKVLLSAGYRLARV
RMLDMFPHTGHLESMALFINERAPEVAAK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctcccaaacgccgcgtgacgacccggcagagctcacaaatcttc
accgtgacggtgagcgatctcgatcctttcggccagggcgtggcgcgccacgacggcaaa
gcggtgttcgtgccgggcgtattgccgggcgagcaggcggaaatccagctgaccgaagat
aagcgccagttcgccaaaggcaagctcaagcgcctgctgagccgcagcccacagcgggtg
gcgccgcgctgcccgcatttcggcgtgtgcggcggctgccagcagcagcatgcggatgag
gcgctgcaacagcagagcaaggcggcggcgctggtgcgcatgatcgcccgcgaaaccggg
gtgaccccgcagcaggagccggtgatcgccggcccggaatacggttatcgccgtcgcgcc
cgcctgagcctggcgtggcagcccaagctgcagcgcctgatgatgggctttcgacaggcg
gcctccagcgagctggtggcggtggagcactgcccggtgctgcggccggagctggaacgg
ctgctggcgccggtgcgcgcctgcctgagcgggctgcaggcggtacggcggctggggcat
gtagagctggtgctggcggataacggcccgctgctggtgctgcgccatctcgacgcgctg
aaagaggcggatcggcaggcgttgttggcgtttggcgagcgggaaaacctcgccgtttac
ctggcgccggacagcgatcgcgtggaaaaactgtgcggtgacacgccgtattatcaggtt
gacgggctacgcttagacttcagcccgcgcgactttattcaggtcaatgacgccgtaaac
caacaaatggtggcgcaggcccttgaatggctcgacattcaacccaatgatcgggtgctg
gacctgttctgcggcatgggcaattttaccctgccgctggcgcgccgcgccgctgcggtg
gtgggcatcgaaggtgttgccacgctggtagcgaatgggcaatataatgcacataagaat
aagctgaataatgcatcgttcttccacgagaatctggaggacgacgttgcgcggcaacct
tgggcagcacaagggtttgataaggtgatgctggatcccgcccgcgccggtgcggccggg
gtgatgtcacacattgtaaaactggcgccggcgcgggtggtgtatgtttcctgtaacccc
accacgctggctcgcgacagcaaagtgctgttgagcgccggttatcgtcttgcgcgcgtg
cggatgttggatatgtttccgcacacggggcatcttgaatcaatggcgctgtttatcaac
gagcgcgcgccagaggtcgctgcaaagtag
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