Serratia sarumanii: SSARUM_003175
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Entry
SSARUM_003175 CDS
T10280
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ssar Serratia sarumanii
Pathway
ssar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SSARUM_003175 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssar03400
]
SSARUM_003175 (sbcB)
Enzymes [BR:
ssar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SSARUM_003175 (sbcB)
DNA repair and recombination proteins [BR:
ssar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SSARUM_003175 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SSARUM_003175 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SSARUM_003175 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WGZ61449
LinkDB
All DBs
Position
3334306..3335733
Genome browser
AA seq
475 aa
AA seq
DB search
MSSKATATFYIHDYETFGKSPSLDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPE
AVMITGITPQVARAKGVNEAEFTRQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHD
AMSDVYATITMAKLVKQAQPRLFDFLLQHRNKHKLNALIDVAEMTPLVHVSGMFGAARGN
TSWVSPLAWHPDNKNAVIMCDLAGDMTPLLTLSAEQLRERLYTRRDDLAPDQAPVPIKLV
HINKCPVLAPAKTLLPENAERLGIDRQACLQNLQLLKQHPEVREKVVALFAEAEPFKGSD
DVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLAFSDGRMKELLFRFRARNYPNTLDD
AEQRRWLQHRQEALSAERVQSYLLQLESLYNLHEGDKEKTALLKALFDYGKELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgagcagcaaggcaacggccacattttatattcacgattacgaaaccttcggcaaaagc
ccgtcgctggaccgcccggcgcagtttgccggcgtgcgcaccgatatggatttcaacatt
atcgaagagccgctggtcatctactgcgccccggccgacgactacctgccggaacccgag
gcggtgatgatcaccggcatcacgccgcaggtggcgcgcgccaaaggcgttaacgaagcc
gaattcacccgccaaatccaccaggccttcagcgtggccggcacctgcattctcggttac
aacaacatccgtttcgatgacgaagtgagccgcaatatcttctatcgcaacttctacgat
ccctatgcctacagctggcaaaacggcaactcgcgctgggatctgctggatgtgatgcgc
gcctgctacgccctgcgcccggacggcatcgtctggccggaaaacgaagacggcttcccc
agcttccgcctggagcatctcacgcgcgccaacggcgtcgagcacacgcaggctcacgac
gcaatgtcggacgtttacgccaccatcaccatggccaagctggtcaagcaggcgcagccg
cggctgttcgatttcctgttgcagcaccgcaacaagcacaagctgaacgccctgatcgac
gtcgccgaaatgacgccgctggtgcacgtctccggcatgtttggcgcggcgcgcggcaac
accagctgggtgtcgccgttggcctggcacccggacaacaaaaacgcggtgatcatgtgc
gatctcgccggcgatatgacgccgctgctgacgctgagcgctgagcagctgcgtgaacgg
ctgtacacccgccgcgacgacctggcgccggatcaggcgccggtgccgatcaagctggtg
cacatcaacaaatgcccggtgctggcgccggccaaaaccctgctgccggagaacgccgag
cggctgggcatcgatcgccaggcctgcctgcaaaacctgcagctgctgaaacagcacccg
gaagtgcgcgagaaagtggtggcgctgttcgccgaagccgagccgttcaaaggctccgac
gacgtcgacgcccggctgtatgacggcttcttcagcgacgccgacaaggcggcgatgagg
attatccagcagaccaagccgcagaacctgccggcgctggatctggccttcagcgacggc
cgcatgaaagagctgctgttccgcttccgcgcgcgcaactacccgaatacgctggacgat
gccgaacagcgccgctggctgcagcaccgccaagaagcgctgagcgcggagcgcgtgcag
agttacctgctgcagctcgaatcgctgtataacctgcacgaaggcgacaaagagaaaacc
gccctgctgaaagcgctgttcgattacggcaaagagttggtggggtaa
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