Sphingomonas sabuli: H8M03_04580
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Entry
H8M03_04580 CDS
T07540
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ssau
Sphingomonas sabuli
Brite
KEGG Orthology (KO) [BR:
ssau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssau03016
]
H8M03_04580 (rnd)
Enzymes [BR:
ssau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
H8M03_04580 (rnd)
Transfer RNA biogenesis [BR:
ssau03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H8M03_04580 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QNM83607
UniProt:
A0A7G9L4Q8
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All DBs
Position
914176..915363
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AA seq
395 aa
AA seq
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MKIHPLITQTAPLTELVERLSKHPFVAVDTEFMRENSYWPELCLIQIASTEEAAAIDPLA
EGLDLTPLLDLLVDNPEVLKVFHAGSQDLEIIHNLTGKVPVPLFDTQVAAMALGHGEQVG
YSNLIESMLGHSLDKGARFTDWSRRPLDKRQIDYAIADVTHLSKVFPRLLEKLKKTGRGG
WLDEEMERLSDTSSFAFPPEDAWKRLRLPSRNPAVLGRLKALAGWRETEARTKNIPRGRI
VKDDTLVELAAHPPKKQDDLGKVRGLSAGWRTNDIGVRLMEALAVSEPLGQDEMPSKEPR
RPGLTKDAALVSDLLKLLLKIRAKESGVAPKLIARSDDLESLAAGVRDLKMLSGWRFEEF
GRDALDLVEGRLGFAIENGKLKMSRLAEKVEEPTA
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcaccccttaatcacccagaccgccccgcttaccgaactggtcgagcggttg
tcgaagcacccgttcgtcgccgtggacaccgagttcatgcgcgaaaacagctattggccc
gaactgtgcctgatccagatcgcgtccaccgaggaagcggcggcgatcgatccgctggcg
gaaggtctcgacctcacccccctgctcgacctgctggtcgacaatcccgaagtgctgaag
gtcttccacgccggcagccaggatctggagattatccataacctgaccggcaaggtgccc
gtgcccctgttcgatacgcaggttgcggcgatggccttggggcatggcgaacaggtggga
tattcgaacctgatcgaatcgatgctaggccacagtctcgacaagggcgcgcgctttacc
gactggagccggcggccgctcgacaagcgacagatcgattacgcgatcgccgacgtcacg
cacttgtccaaggtcttcccgcggctgctcgagaaattgaagaagaccgggcgcggcggc
tggctggacgaggagatggagcgcctgtccgatacgtccagcttcgccttcccgccggaa
gacgcgtggaagcggttgcggctgcccagccgcaacccggcggtattggggcggttgaag
gccctggccggctggcgcgagaccgaggcgcggaccaagaacattccgcgcggccggatc
gtcaaggacgatacgctggtcgaactggccgctcatccgcccaagaagcaggacgatctg
ggcaaggttcgcggcctgtccgcgggttggcgcaccaacgatatcggcgtccggctgatg
gaggcgctggccgtttccgagccgctcggccaggacgaaatgccgtccaaggagccacgc
cgcccgggtttgaccaaggacgccgcgctggtcagcgacctgctcaagctgctgctcaag
attcgggccaaggaatcgggcgtcgcgccgaagctgatcgcgcgcagcgacgatctcgaa
tcgctcgccgccggggtgcgcgacctcaagatgctgtcgggctggcggttcgaggaattc
ggccgcgatgccctcgacctggtcgaagggcggcttggtttcgcgatcgagaacggcaag
ctcaagatgagccggctggcggaaaaggtcgaagaaccgacggcctag
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