Sphingomonas sabuli: H8M03_05525
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Entry
H8M03_05525 CDS
T07540
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssau
Sphingomonas sabuli
Pathway
ssau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8M03_05525 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssau03019
]
H8M03_05525 (pnp)
03016 Transfer RNA biogenesis [BR:
ssau03016
]
H8M03_05525 (pnp)
Enzymes [BR:
ssau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H8M03_05525 (pnp)
Messenger RNA biogenesis [BR:
ssau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H8M03_05525 (pnp)
Transfer RNA biogenesis [BR:
ssau03016
]
Prokaryotic type
tRNA degradation factors
H8M03_05525 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QNM83781
UniProt:
A0A7G9L582
LinkDB
All DBs
Position
1082549..1084930
Genome browser
AA seq
793 aa
AA seq
DB search
MFDIKTVEIALGDKTLKLETGRVARQADGAVLATLGETVVLCAVTAAKKVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEVLVIAQVLSY
DGENEPDIVAMYAASAALTISGVPFMGPIGAARVGYKDGEYILNPSPEQQKESELDLVMA
GTLNAVMMVESEAKELSEEIMLGAVMFGHKASQQVCEAVISLAEKAAKEPWELNSDKDQK
SGIKAKLKDLIGKDIEAAYKLTDKQERSTALSNARDKAKEAFADAEPQEQLVAGKAVKGL
EADIVRTAILKDGRRIDGRDTKTVRPIEAMVHFLPRAHGSAIFTRGETQAIVTTTLGTKE
SEQMIDGLEGLSYSRFMLHYNFPPYSVGEVGRFGAPSRRETGHGKLAWRALHPMLPSVEE
FPYTIRVLSDITESNGSSSMATVCGGSLAMMDAGVPLKRPVAGIAMGLILEGSDYAVISD
ILGDEDHLGDMDFKVAGTSEGVTSLQMDIKVAGITEEIMQTALAQAKDGRAHILGEMAKA
LPETRGELSEHAPRIETMQIPKDKIREVIGTGGKVIREIVAETGAKVDIDDEGVIKISSS
DLSQIEAARQWIQGIVAEPEVGTIYTGKVANIVDFGAFVTFMPGKDGLVHVSEIKNERVE
NVRDVLEEGQEVKVKLLEVDQRGKVRLSMRLVDQETGAELEDTRPPREPREGGDRGPRGD
RGGRGGGRDGDRRRGGGGGGRGGDRDRGPRGDRDGGGRGDRGPRRDRDGNEGGKDEGGEP
KFAPAFLTGGDED
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatatcaagactgtagaaatcgcgctcggggacaagaccctgaagctcgaaacg
ggccgcgttgcccgccaggccgacggcgcggttctcgcgacccttggcgaaaccgtcgtg
ctgtgcgccgtcaccgccgccaagaaggtcaaggaaggccaggatttcttcccgctgacc
gtccactaccaggaaaagttttccgctgccggccgtatccccggcggcttcttcaagcgc
gagcgtggagcgaccgagaaggaaacgctgaccagccgcctgatcgaccgtccggtccgc
ccgctgttcccggaaggcttctacaatgaagtcctcgtgatcgcgcaggtgctgtcctac
gacggcgagaacgagcccgacatcgtcgccatgtacgccgcgtcggccgcgctgacgatt
tccggcgttccgttcatgggtccgatcggcgccgcgcgcgtcggctacaaggatggcgaa
tacatcctcaacccgagcccggaacagcagaaggaaagcgagctcgacctcgtcatggcc
ggcacgctgaatgccgtgatgatggtggaatcggaagccaaggagctgtccgaagagatc
atgctcggcgccgtgatgttcggtcacaaggccagccagcaggtctgcgaagcggtcatc
tcgctcgccgaaaaggccgccaaggagccgtgggaactgaacagcgacaaggaccagaag
tcgggcatcaaggccaagcttaaggacctcatcggcaaggacatcgaagccgcctacaag
ctgaccgacaagcaggagcggtcgaccgcgctcagcaatgcgcgcgacaaggcgaaggag
gctttcgccgacgccgagccgcaggaacagctggtcgccggcaaggcggtcaaggggctg
gaagccgacatcgtccgcaccgccatcctgaaggacggccgccgcatcgacggtcgcgac
accaagacggtgcgcccgatcgaagcgatggtccacttcctgccgcgcgcgcacggttcg
gcgatcttcacccgcggtgaaacgcaggcgatcgtaaccaccacgctgggcaccaaggaa
tcggagcagatgatcgacgggctggagggtctctcttactcgcgcttcatgctgcactat
aacttcccgccctattcggtcggtgaagtcggccgcttcggcgccccgtcgcgccgcgaa
accggccacggcaagctcgcctggcgcgcgctgcacccgatgctgccgagcgtcgaggaa
ttcccgtacacgatccgcgtcctgtccgacatcaccgagtccaacggctcgagctcgatg
gcaacggtgtgcggcggctcgctggccatgatggacgccggcgttccgctcaagcggccg
gtcgcgggcatcgccatgggcctgatcctcgaaggcagcgactatgccgtcatctcggac
atcctgggcgacgaggaccaccttggcgacatggacttcaaggttgccggcacgtcggaa
ggcgtgacctcgctccagatggacatcaaggtcgccggcatcaccgaggaaatcatgcag
accgcccttgcccaggcgaaggacggccgtgcgcacatcctcggtgaaatggccaaggcc
ctgccggaaacgcgtggcgagctcagcgagcacgcaccgcgcatcgagacgatgcagatc
cccaaggacaagatccgcgaagtcatcggcaccggcggcaaggtcatccgcgaaatcgtc
gcggagaccggcgccaaggtcgacatcgacgacgagggcgtgatcaagatcagctcgtcc
gacctgtcccagatcgaggccgcgcgccagtggatccagggtatcgtcgcggagccggaa
gtcggcaccatctacaccggcaaggtcgccaacatcgtcgatttcggcgcgttcgtgacg
ttcatgcccggcaaggacggcctggtgcacgtgtccgaaatcaagaacgagcgggtcgaa
aacgtccgcgacgtgcttgaggaagggcaggaagtgaaggtcaagctgctcgaggtcgac
cagcgcggcaaggttcgcctgtcgatgcgcctcgtcgaccaggaaaccggcgcagagctg
gaggacacccgtccgccgcgcgaaccgcgtgaaggcggcgatcgcggtccccgtggcgac
cgcggtggccgtggcggcggccgggacggcgaccgccgtcgtggcggcggcggcggtgga
cgcggcggcgaccgcgaccgcggtccgcgcggcgaccgggacggcggcggccgtggcgac
cgcggcccgcgccgcgaccgcgacggtaacgaaggcggcaaggacgagggcggcgagccc
aagttcgccccggccttcctgaccggcggcgacgaagactaa
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