Sphingomonas sabuli: H8M03_07230
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Entry
H8M03_07230 CDS
T07540
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssau
Sphingomonas sabuli
Pathway
ssau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8M03_07230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssau03019
]
H8M03_07230
03009 Ribosome biogenesis [BR:
ssau03009
]
H8M03_07230
Enzymes [BR:
ssau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H8M03_07230
Messenger RNA biogenesis [BR:
ssau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H8M03_07230
Ribosome biogenesis [BR:
ssau03009
]
Prokaryotic type
rRNA helicases
H8M03_07230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QNM81851
UniProt:
A0A7G9KZQ2
LinkDB
All DBs
Position
complement(1421834..1423531)
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AA seq
565 aa
AA seq
DB search
MEDDRIHSALAEALTARGFEGLTAVQSAVLAEEAQRRDLVVSAKTGSGKTVAFGLAMADE
LLQGDRLTFTREPLALVIAPTRELAMQVSRELEWLYAHAGGRVISCVGGMDPMKERRSLA
AGVHIVVGTPGRLRDHLERGALELSSLRVAVLDEADEMLDMGFREELEEILDATPQGRRT
LLFSATMPRPIVALAKRYQQDALRIETLGDKEGHHDIAYQAVAVSPTDTEHAVVNLLRFH
EAETAILFCATRDAVRRLHASLTERGFDAVALSGEHSQSERNHALQALRDRRARVCVATD
VAARGIDLPSVSLVIHVELPRDAEALQHRSGRTGRAGRKGTAILIVPYQRRKRVEGMLRG
ARINVEWTGVPTAAEIRERDRARLLAARSEPAELEEEDQELARQLMAKLSPEAIASALVK
TLRNDMPAPEDILSAAARTQAKGADGHRPGFEGANWFRINAGRSHNADPRWLLPLICRYG
HVGRGDIGAIRIAANDSYFQVTQRATPGFIKALKRSTLAPEDEGMIIEPAPPRDASQPRP
ASTYRPERAHEKPRSRKKPRKPKSA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgatagaatacattcggcgcttgccgaagcgctgacggcgcgcggcttcgag
ggtctaacggcggttcaatcggcggtgcttgccgaggaagcgcaacgacgcgaccttgtg
gtctccgccaaaactggatccgggaagaccgtcgcctttggcttggcgatggctgacgag
ctccttcagggggatcggctgactttcacccgcgagccgctcgcgctcgtgatcgcgcct
acgcgtgagttggcgatgcaggtgagccgagagcttgagtggctttatgcccatgcgggc
gggcgtgtcatatcctgcgtgggtggcatggacccgatgaaggagcgccgctcgctggct
gcaggggttcatatcgtcgtcgggacacccgggcgactgcgggatcatctggaacggggg
gcgctcgagctgtcctcgcttcgcgtcgcagtgctcgatgaggcggacgagatgctcgac
atgggctttcgggaagagctggaagagatcctcgacgcgacgccgcagggccggcgcacg
ttgctgttctccgccaccatgccgcggccgatagtggcgctggccaagcgctatcagcag
gacgcgctgcggatcgaaacgctgggcgacaaggagggtcaccacgacatcgcctaccag
gcggtcgcagtgtcgccgaccgacaccgaacatgcggtggtcaacctgttgcgcttccac
gaggcggagacggctattctgttctgcgcgacgcgcgacgcggtgcggcgcctgcacgcc
agcctcaccgagcgcggcttcgacgcggtcgcgttgtccggcgagcatagtcagagcgag
cgcaatcatgcgcttcaggcccttcgcgaccggcgggcgcgggtgtgtgtcgccacggat
gtcgccgcacgcggcatcgaccttccctcagtgtcgctcgtgattcatgtcgagctgccg
cgcgatgcggaagcgctgcagcaccgatcggggcggaccggccgcgcgggccgcaaagga
acggcgatcctgatcgtgccataccagcggcggaagcgggtcgaaggaatgctccgcgga
gcccgcatcaacgtcgagtggaccggcgtgccgaccgccgccgagatccgcgagcgggac
cgggcgcggctgctcgccgcccggtccgaaccggccgagttggaggaggaagaccaggag
cttgcgcgccaactgatggccaagctgtcgcccgaagccatcgctagcgcgcttgtgaag
acgctgcgcaacgacatgccggctcccgaagacatcttgtcggctgcggcgcggactcaa
gcgaagggcgccgacggtcatcgccccgggttcgaaggcgccaactggttccggatcaac
gccggccgcagccataatgccgatccgcggtggctgctgccgctgatctgccggtacgga
cacgtcggacgcggcgacatcggcgcgatccggatcgctgcgaatgacagctatttccag
gtgactcagcgagccacgcctggcttcatcaaggcgctaaagcgctccacgcttgcgccc
gaagacgaagggatgatcattgagccggcgccgccgcgcgatgcatcgcagccgcgtccg
gcctccacctaccgtcccgagcgggcccacgagaagccgcgctcgaggaagaaaccaagg
aaaccaaaatccgcctag
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