Sphingomonas sabuli: H8M03_09025
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Entry
H8M03_09025 CDS
T07540
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ssau
Sphingomonas sabuli
Pathway
ssau02020
Two-component system
ssau02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ssau00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H8M03_09025 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H8M03_09025 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssau03021
]
H8M03_09025 (rpoN)
Transcription machinery [BR:
ssau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H8M03_09025 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
MLTR_LBD
HTH_31
AAA_28
HTH_21
HTH_12
Motif
Other DBs
NCBI-ProteinID:
QNM82165
UniProt:
A0A7G9L0L6
LinkDB
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Position
complement(1812044..1813492)
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AA seq
482 aa
AA seq
DB search
MGLGPSIQIRQSQQLVLTPQLAQAIKLLALSNVELEAAIAEEVSKNPLLDVGSSDDGEDP
GEAGETPSDAPSLTDELIPGAGEDDRPLDYDFNGEALQNDSFADVTVASGSGEEFDFDRI
EATAASLAEYLEGQLHGASGPRAALAEIIVGQLDVNGYLSTPIADIARDTGATAAEVEDA
LRLVQDLDPSGVGARSLSECLALQAQAADRYDPAMARLIDNLELLARGRMNDLKRICGVD
DEDLADMVAELRAYDPKPGSRFSSEAVEQVTADVFVRRTREGFLVELNGAALPRLLVNRR
YYQELRQGPQDKASKAWLSECLASANWLVKALDQRARTIVKVVSEIVKTQQGFFERGAEA
LKPLTLRQVAEAIDMHESTVSRVTTNKYLLCDRGLVELKYFFRSGVASSDGEGDGASAEA
VKSAIREIIDREAEVLSDDAIAALLKQRGFDCARRTVVKYRELLGIGSSVQRRRQRKIAG
LG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgggcctcggtccaagcatccagatccgccaatcgcagcagctggtgctcacgccgcag
ctggcgcaggcgatcaagctgctggcgctgagcaacgtcgagctggaagcggcgattgcc
gaggaagtgtcgaaaaatccgctgctggacgtgggcagcagcgacgatggcgaggatccc
ggcgaggccggcgaaaccccgagcgacgcgccgtcgctgaccgacgaattgatccccggc
gcgggcgaggacgaccggccgctcgattacgacttcaacggcgaggcgttgcagaacgac
agtttcgccgatgtcaccgtggcgtcgggcagcggcgaggagttcgacttcgaccgcatc
gaggcgaccgccgcatcgctggccgaatatctggaagggcagttgcacggcgcgtccggg
ccgcgggcggcactggcggagatcatcgtcggccagctggacgtcaacggatatctgtcg
acgccgattgccgacatcgcccgcgataccggcgcgacggcggccgaagtggaagacgcg
ttgcggctggtgcaggatctggatccgtcgggcgtgggtgcgcgcagcctgtccgaatgc
ctggccctgcaggcgcaagcggcggaccgttacgacccggcgatggcgcgcctgatcgac
aatctggagttgctcgcacgcgggcggatgaacgacctcaagcggatttgcggggtcgat
gacgaggatctggccgacatggtcgcggagctgcgcgcctacgatcccaagccgggcagc
cgcttttcgtccgaggccgtcgaacaggtcaccgcggacgtgttcgtgcgccgcactcgc
gaggggtttctcgtcgagctgaacggcgccgcgctgccgcggctgctggtcaaccgccgc
tattaccaggagcttcgccaggggccgcaggacaaggccagcaaggcgtggctgagcgaa
tgcctcgccagcgccaactggctggtcaaggcgctcgaccagcgcgcccggacgatcgtc
aaggtagtgtcggagatcgtcaagacccagcagggcttcttcgagcgcggcgcggaggcg
ttaaagccgctgaccctgcgccaggtcgccgaggcgatcgacatgcacgagtcgaccgtc
agccgggtgacgacaaacaagtatctgctgtgcgatcgcgggctggtggagctgaaatat
ttcttccgttccggtgtcgcgtccagcgacggcgagggcgacggggcgtcggcggaagcg
gtcaagtcggcgatccgcgagatcatcgaccgcgaggccgaggtgctgagcgacgacgcc
atcgcggcgctgctcaagcagcgcggtttcgactgtgcccgccggacggtggtcaaatat
cgcgaattgctgggcatcgggtcgtcggtccagcgccgccgccagcgcaagatcgccggg
ctgggctaa
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