Sus scrofa (pig): 100037949
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Entry
100037949 CDS
T01009
Symbol
UIMC1
Name
(RefSeq) BRCA1-A complex subunit RAP80
KO
K20775
BRCA1-A complex subunit RAP80
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100037949 (UIMC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100037949 (UIMC1)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
100037949 (UIMC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
UIM
DUF7385
Rad50_zn_hook
zf-WRNIP1_ubi
UIM_2
Motif
Other DBs
NCBI-GeneID:
100037949
NCBI-ProteinID:
NP_001090916
Ensembl:
ENSSSCG00000022508
UniProt:
A0P8Z5
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All DBs
Position
2:80895631..81040712
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AA seq
721 aa
AA seq
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MPRRKKKGKEASGAQNLEKKDAETASSVSVKKKRRIEDGFIVISDSDGEEPKEENGLQKT
KIKQSSRAKCLAKRKIAQMTEEEQFALALKMSEQEAREVNSQEEEEEELLRKAIAESLNS
CRPSDASATRSRPLATGPSSESHQEKSTDSGTTEGIWQLVPPSLFKGSHISQGNESEERE
EPWDHNENTEEEPVSVSSGSWDQSSQPVFENENVKCFDRCTGHLAEHTQCGKPQESTGRG
CAFHKAAQGRGDTSRHCLPTPTDAKGLQDTGGTVHYFWGIPFCPAGVDPNQYTKVILCQL
EVYQKSLKMAQRQLLKKKGFGEPVLPRPPSLIQNECGQGDQASEKNEGISEDMGDEDKEE
RQESRASVWRAKTKDFQEGPIKTLKEKLLLEEEPTTSHGQSSQGLFVEETSEEGNSVPAS
QSIAALTGKRSSVLMPESSAEEITVCPETQLSSPETFDLEKEGFPDSRETLYEVSIMADK
EVDNREDAKKEIHTSTFSSSTQVSCPLCDQGFPPTKIERHAMYCNGLMGGDTVLTRRQKE
AKNKSDNGIAAQTSLDIDKNEKCYLCKSLVPFREYQCHVESCLQLARVDQGDGPEESGRL
CLAVDGKRPQQLKNLKEKDRSEGRLISLLEQSEYKTTDAEIKTKFSETGDFRVPSAGVEE
AGCSREMQSSLAHLDLNESPIKSFVSVSEAADCLVDFKKQLTARPGSRTRTKAGRGRRRK
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgccacggagaaagaaaaaaggtaaagaagcctctggagctcagaacctagagaaaaaa
gatgcagaaactgccagttctgtcagtgtgaagaagaagcgtcgaattgaagatggattc
attgtgatatctgatagtgatggagaggaaccaaaggaggagaatggattgcagaaaacg
aagataaaacagtcgagtagagcaaagtgtttggccaaaagaaaaattgcacaaatgaca
gaagaagaacagtttgctctggctctcaaaatgagtgaacaggaagctcgggaggtgaac
agccaggaggaggaggaagaagagctcttgaggaaagccattgcagaaagtctgaatagt
tgccggccttctgatgcttctgctaccagatctcgacctctggctactggaccatcttca
gagtcccatcaagagaaaagcacagactctgggaccactgaaggcatatggcagctggta
cctccatcactgtttaaaggctcacatatcagtcagggaaacgagtctgaggaaagagag
gagccttgggaccacaatgaaaacactgaagaggagccggtctctgtcagctcaggaagc
tgggaccagtcaagccagccagtgtttgagaatgagaacgttaaatgttttgacagatgt
actggccacttggctgagcacacacagtgtgggaagccacaggaaagtactgggaggggt
tgtgcttttcacaaagctgcccagggtaggggggacacatctaggcactgtctgcctacc
ccaacagatgccaaaggtcttcaggacactgggggcactgtgcactacttctggggtatt
ccattctgccctgctggagtagaccctaaccagtatactaaggtcattctctgccagttg
gaggtttatcagaagagcctgaaaatggctcagaggcagctcttaaaaaaaaaagggttt
ggggaaccagtgttacctagacctccttctctgatccagaatgaatgtggccaaggagat
caggctagtgaaaaaaatgaaggcatctcagaagatatgggagatgaagacaaagaggag
aggcaggagtctagggcatctgtctggcgcgcaaaaaccaaggatttccaagaaggccca
attaaaaccttgaaagagaaacttttattggaggaagaaccaacaaccagtcatggtcag
tcttcccaagggctgtttgttgaagaaacttctgaagaaggaaactctgtacctgcctca
caaagcattgctgctttgactggtaagagaagctcagtccttatgccagagagttctgca
gaggaaatcactgtgtgtcctgagacacagctaagttcccctgaaacttttgaccttgaa
aaagaaggctttccagatagcagagagaccctgtatgaagtaagcataatggcagataag
gaggttgataacagggaagatgctaagaaggaaatacatacttctaccttctcatctagt
acccaggtatcctgcccactatgtgaccaaggcttcccacccacaaagattgagcgacat
gccatgtactgcaatgggctgatggggggagatacagtgttgactcggagacaaaaagag
gccaagaacaagagtgacaatgggatagctgcccagacttccctagacattgacaagaat
gagaagtgttatctctgtaaatccctcgtcccattcagagagtaccagtgtcatgtagag
tcctgtctccagcttgccagagttgaccaaggagatgggcctgaagagagtgggagacta
tgcttggctgtggatgggaagcgtccacagcagctgaagaacctgaaggaaaaagaccgg
agtgaaggccgactcatcagtctcttggaacagtctgaatataagaccacagatgcagag
ataaagaccaagttttcagaaacaggagacttcagggtgccttcagcaggggtagaagag
gcaggctgcagcagagagatgcagagttcccttgcacatcttgacttaaatgagtctccc
atcaagtcttttgtttctgtttcagaagctgcagattgcttagtggactttaaaaagcag
cttactgcccggccaggtagccggacacggaccaaagcaggcagaggaagaaggaggaaa
tcctga
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