KEGG   Sus scrofa (pig): 100125839
Entry
100125839         CDS       T01009                                 
Symbol
RAE1
Name
(RefSeq) mRNA export factor
  KO
K14298  mRNA export factor
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03013  Nucleocytoplasmic transport
ssc05014  Amyotrophic lateral sclerosis
ssc05164  Influenza A
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100125839 (RAE1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    100125839 (RAE1)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100125839 (RAE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100125839 (RAE1)
   03036 Chromosome and associated proteins [BR:ssc03036]
    100125839 (RAE1)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100125839 (RAE1)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    100125839 (RAE1)
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40 WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT140_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 100125839
NCBI-ProteinID: NP_001098766
Ensembl: ENSSSCG00000007503
Vega: OTTSUSG00000000591
UniProt: A5GFN6 A0A480UJG9
LinkDB
Position
17:57751858..57768594
AA seq 368 aa
MSLFGTTSGFGTSGTSMFGSTTTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagtctgtttggaacaacctcgggttttggaaccagtgggactagcatgtttggcagc
acaaccacagataatcacaaccctatgaaggatattgaagtaacatcctctcctgacgat
agcattggttgtctatcttttagcccacccaccttgccggggaactttctcattgcagga
tcgtgggctaacgatgttcgctgttgggaagttcaggatagtggacagactattccaaaa
gctcagcagatgcacactgggcccgtgcttgatgtctgctggagtgatgatgggagcaaa
gtatttacagcatcatgtgataaaactgccaaaatgtgggacctcaacagtaaccaggcg
atacagattgcacagcatgatgctcctgttaaaaccatacattggatcaaagcaccaaac
tacagctgtgtgatgacggggagctgggataagacgttgaagttttgggatacacggtca
tcaaatcctatgatggttttgcagctccctgaaaggtgttactgtgctgacgtgatatac
cctatggccgtggtggcaactgcagagaggggcctgattgtctatcagctggagaatcag
ccctctgaattcaggaggatagaatcgccgctgaaacaccagcatcggtgtgtggccatt
tttaaagacaaacagaacaagccgaccggtttcgccctggggagcatcgaggggagagtc
gccattcactacatcaaccctccgaaccccgccaaagataacttcaccttcaagtgtcat
cgctctaacgggaccaacacgtccgctccgcaggacatctacgcggtaaacgggatcgca
ttccatcctgttcacggcacccttgcaaccgtggggtctgatggtagattcagcttctgg
gacaaagatgccagaacaaaactcaaaacttcggagcagttagaccagccaatatcggct
tgctgcttcaatcacaacggaaacatatttgcctacgcttccagctacgactggtcaaag
ggacatgaattttataatccccagaagaaaaattacattttcctgcgtaacgcagctgag
gagctaaaaccccggaataagaaatag

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