Sus scrofa (pig): 100135660
Help
Entry
100135660 CDS
T01009
Symbol
NOD1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04621
NOD-like receptor signaling pathway
ssc05132
Salmonella infection
ssc05133
Pertussis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
100135660 (NOD1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100135660 (NOD1)
05133 Pertussis
100135660 (NOD1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssc04054
]
100135660 (NOD1)
Pattern recognition receptors [BR:
ssc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
100135660 (NOD1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_NLRC3
LRR_TMOD-LMOD
NLRC4_HD2
LRR_6
CARD
LRR_CARMIL
WHD_NOD2
LRR_4
LRR_NLRC4
LRR_MHP1-HER1-GIP3
AAA_22
AAA_16
ABC_tran
AAA_25
PIF1
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
100135660
NCBI-ProteinID:
NP_001107749
Ensembl:
ENSSSCG00000016678
Vega:
OTTSUSG00000003516
UniProt:
B0FSM7
LinkDB
All DBs
Position
18:42464667..42509135
Genome browser
AA seq
953 aa
AA seq
DB search
MEKQGRSEMEVAPSESHSYIKLLKVNREHLVTHIRNTQCLVDNLLHNDYFSAEDAEIVCA
GPTQPDKVRRVLDLVQSKGEEVSEFFVFVLQQLADAYVDLRPWLAEIGFSPSQLVQSKAV
VNTDPVSRYSQKLRHQLGRDSKFILCYAQKEELLLEEMYTDTIMELVDFGNESLGSVGSL
ACLLDPSTGVLNKEGETIFIFGDAGVGKSMLLQRLQSLWASGQLDPGLKFFFHFRCRMFS
CFKESATLCLQDLLFKHYCFPEQDPEEVFTFLLRFPHTALFTFDGLDELHSDFDLSGEPD
TSSPWEPAHPLALLANLLSGKLLKGARKLLTARTGVEIPRQLLWKKVLLRGFSPSHLRAF
TRRMFPERAVRQRLLDQLEANPNLCSLCAVPLFCWIIFRCFQHFHDAFDSSLQLPDRTVT
LTDVFLLVTEVHLNRTQPTSLVQRNTRSQTETFRAGQGTLRSLGQVARWGMERSLFLFNQ
EEVQASEVQEGDLQLGFLRAVPELGLGGDQQSYEFLHLTLQAFFAALFLVVDDSVGPQEL
LRFFQEWVPPGEAEAASCFLPFLPGQCLGGRGLVGEDPFKNKDHFHFTNLFLCGLLSKGK
QKLLRHLVPAATLRRKRKALWAHLFSSLRSHLKNLPRVQSGGFSQVQAMPTFIWMLRCIY
ETQSEKVGQLAARGICANYLKLTFCNACSADCSALSFVLHHFRKQLALDLDNNNLNDYGV
RELQPCFSRLTVIRLSVNQITDSGVKVLYEELTKYKIVTFLGLYNNQITDVGARYVARIL
DECKGLKCLKLGKNKITSEGGKCLARAVKNSRSIFEVGMWGNQIGDEGAKAFAEALRNHP
SLTNLSLAFNGISTEGGKGLAQALQQNASLRIFWLTQNELDDEVAESLAEMLKVNQTLKH
LWLIQNQITARGTARLADALQNNTGIMEICLNGNLIKPEEAKVFEDEKRIVCF
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcagggccgcagtgagatggaagtagccccgtcagagtctcactcctacatt
aaattgttgaaagtcaaccgggagcatctggtcacccacatccgcaacacccagtgtctg
gtggacaacttgctgcacaacgactacttctccgcggaagacgccgagatcgtgtgcgcc
ggccccacgcagcccgacaaggtgcgcagagttctggacctggtgcagagcaagggtgag
gaggtgtcggagttcttcgtcttcgtgctccagcagctcgcagatgcttacgtggacctc
aggccttggctggccgagatcggcttctccccttcccagctcgttcagagcaaagctgtc
gtcaacaccgatccagtgagcagatactcccagaagctgcgtcaccaactgggccgggac
tccaagttcatcctgtgctatgcccagaaggaggagctactgctggaggagatgtataca
gacaccatcatggagctggtggactttggcaacgagagcctgggcagtgtaggcagcctg
gcctgcctcctggacccctccacgggcgtccttaacaaggagggcgagaccattttcatc
ttcggtgacgcaggggtgggcaagtccatgctgctgcagcggctgcagagcctctgggcc
tctggccagctggatcctgggctcaagttcttcttccacttccgctgccgcatgttcagc
tgcttcaaggagagcgccaccctctgtctgcaggacctgctcttcaagcactactgcttc
ccggagcaggaccccgaggaggtgttcaccttcctgctgcgcttccctcacaccgccctc
ttcaccttcgacggcctggacgagctgcactcggacttcgacctgagcggcgagccggac
acctcctccccctgggagccagcccaccccctggccctgctggccaacctgctcagcggg
aagctgctcaagggggcccgcaaactgctcacggcccgcacgggcgtcgagatcccgcgc
cagctcctctggaagaaggtgctcctgcggggcttctcccccagccacctgcgcgccttc
accaggaggatgttccccgaacgcgccgtgcgccagcgcctgctggaccagctggaagcc
aaccccaacctctgcagcctgtgcgccgtgccgctcttctgctggatcatcttccgctgc
ttccagcacttccacgacgccttcgacagctccctgcagctgcccgaccgcacggtgacc
ctgaccgatgtcttcctgctggtcaccgaggtccatctgaacaggacgcagcctaccagc
ctggtgcagcgcaacacgcggagccagacggagaccttccgcgccggccagggcaccctg
cgttccctggggcaggtggcccgctggggcatggagaggagcctcttccttttcaaccag
gaggaggtgcaggcgtccgaggtgcaggagggggacctgcagctgggcttcctgcgggca
gtgccagagttgggcctcggaggggaccagcagtcctacgagtttctccatctcaccctt
caggccttctttgccgccctctttctcgtggtggatgacagtgtgggccctcaggagctg
ctgcggttcttccaggagtgggtgcctcctggggaggcagaggccgcgtcctgcttcctc
cccttcctccccggccagtgcttgggggggcgtggcctggtgggggaggaccccttcaag
aacaaggaccactttcattttaccaacctcttcctgtgcgggctgctgtccaaaggcaaa
cagaaactcctgcggcacctggtgcccgccgccaccctgcgccgaaagcgcaaggccctg
tgggctcacctgttctccagcctgcgctcccacctgaagaacctgccccgagttcagtcg
gggggcttcagccaggtgcaggccatgcccaccttcatctggatgctgcgctgcatctac
gagacgcagagcgagaaggtagggcagctggctgccaggggcatctgtgccaactacctc
aagctgaccttctgcaacgcctgctcggccgactgcagcgccctctccttcgtcctgcac
cacttccgcaagcagctggccctcgacctggacaacaacaatctcaatgactacggggtg
cgggaactgcagccctgcttcagccgcctcacggtcatcagactcagtgtaaaccagatc
actgacagtggggtgaaggtgctatatgaagagctgaccaaatacaaaatcgtgacattt
ttaggcttatacaacaaccagatcactgatgtcggagccaggtacgtcgccagaatcctg
gatgagtgcaaaggcctcaagtgcctgaaactgggaaaaaacaaaatcacgagcgaagga
ggaaagtgcctggcccgggctgtgaagaacagcagatccatctttgaagttgggatgtgg
ggcaaccaaatcggcgacgaaggggcgaaggcctttgcagaggctctgaggaaccacccc
agcctgaccaacctgagtcttgcattcaacggcatctctacagaaggaggaaagggcctc
gcacaggccctgcagcagaatgcgtctctgagaatattctggctcacccaaaatgagctc
gatgacgaagtggcagagagcttagcagagatgctgaaagtcaaccagacgttgaaacac
ttatggcttatccagaaccagatcacagccagggggactgcccggctggcggatgcctta
cagaacaacactggcataatggagatttgcttaaatggaaacctgataaagccagaggag
gccaaagtctttgaagacgagaagcggattgtctgtttctga
DBGET
integrated database retrieval system
