KEGG   Sus scrofa (pig): 100144534
Entry
100144534         CDS       T01009                                 
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03018  RNA degradation
ssc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100144534 (LSM2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100144534 (LSM2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100144534 (LSM2)
   03041 Spliceosome [BR:ssc03041]
    100144534 (LSM2)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100144534 (LSM2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100144534 (LSM2)
Spliceosome [BR:ssc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100144534 (LSM2)
 Complex C
  U2 snRNP components
    100144534 (LSM2)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 100144534
NCBI-ProteinID: NP_001116608
Ensembl: ENSSSCG00000028232
UniProt: A5A8V8 A0A4X1V9D9
LinkDB
Position
7:complement(23900385..23908523)
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgctcttctattcctttttcaagtcccttgtgggcaaggatgtggtcgtggaactcaag
aatgacctgagcatctgtggaaccctccattctgtggatcagtatctcaacatcaaacta
actgacatcagtgtcacagaccctgagaaataccctcacatgttatcagtgaagaactgc
ttcatccgaggctcagtggttcgctatgtgcagttgccagcagatgaggttgacacacag
ttgctacaggacgcagcaaggaaagaggccctgcaacagaagcagtga

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