Sus scrofa (pig): 100151962
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Entry
100151962 CDS
T01009
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03015
mRNA surveillance pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100151962 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
100151962 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100151962 (PABPC1L)
03041 Spliceosome [BR:
ssc03041
]
100151962 (PABPC1L)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100151962 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
100151962 (PABPC1L)
Spliceosome [BR:
ssc03041
]
Complex C
Other components
Complex C specific factors
100151962 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
100151962
NCBI-ProteinID:
XP_005673019
Ensembl:
ENSSSCG00000007382
UniProt:
F1SDR6
LinkDB
All DBs
Position
17:47321259..47351905
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AA seq
615 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRRERE
AELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEK
HEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN
LDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPY
YASGPPVQPPPRWTAQPPRPSSAYPPAASVVRPAAVSRRPSVPISSSRQVSIHVPRPVPQ
TQGVANIGTQTTGPGVMGCATPSGPLLTHKCCSATHNSPRVQEPGVRVPRQEPLTASVLA
AAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLLMLESPESLSAKVEEAL
AVLQAHQAMERVHVR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggcccgggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgacggaggccatgctctatgagaagttctcgcccgccggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctcgctgggctatgcctacatcaacttccag
cagcccgccgacgcggaacgggcactggacacaatgaacttcgaggtgatcaaaggccag
cccatccgaatcatgtggtcccagcgagacccaggacttcgcaagtctggtgtgggcaac
gtcttcatcaagaacctagaggactccattgacaacaaggccttgtatgacaccttctcc
accttcgggaacatcctctcttgcaaggtggtgtgcgacgatcatggctctcgaggcttc
ggctttgtccattttgagacccacgaagctgcacagaacgccatccgcaccatgaacggg
atgctgctgaatgaccgcaaagtcttcgttggccacttcaagtcccgacgggagcgggag
gcggagctgggagctcgggccttggagttcaccaacatctacgtgaagaacctccacgtg
gacgtggacgagcgttgcctgcaggacctcttctcccagtttgggaagattctgagtgtc
aaggtgatgagggatgacagcggccactcccgaggctttggctttgtcaactttgagaag
catgaggacgcccagaaggcggtgacagacatgaatgggaaggaggtgagcgggcggctg
ctctacgtgggccgggcccagaagcgggtggagcggcagaatgagctgaagcgcaggttc
gagcagatgaagcaggaccggctgacccgctaccagggcgtgaacctgtatgtgaagaac
ctggatgactccatcgatgacgagaaactgaggaaggagtttgctccctatggaatgatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtgtgtttt
tcctctccagaagaggcgacgaaggccgtgacagagatgaatgggcgcatcgtgggcacc
aagccactgtatgtggctctggcccagcgcaaagaggagcggaaagccatcctgaccaac
cagtacattcagcgcctctccactatgcgggccctgggcagccccctcttgggctccctg
cagcagcccaccagctacttcctccccgctgtgccccagcctccagcccagtcgccatac
tatgcctctggcccacccgtccagcctccccccaggtggacagcccagccacccaggccc
tcgtccgcctacccacctgctgcctcagtggtccggccagcagccgtgtctcggcgcccc
tccgtccccatcagcagctccaggcaggtctccatccacgtgccacgcccggtgccccag
acccagggagtagccaacattggtacccagaccacaggacctggcgtgatgggatgtgct
acaccaagcgggcctctcctgacccacaaatgttgttcagcaacgcacaacagtcccagg
gtccaggagcctggtgtgcgcgtccccagacaggagcccctgacggcgtccgtgctggct
gcagccccgctccacgagcaaaagcagatgattggtgagcgtctctacccccttatctac
aatatgcacacgcagctggccggcaagatcacggggatgctgctggagattgacaactcg
gagctgctgctcatgctggagtccccggagtccctcagtgccaaggttgaagaggctttg
gcggtgttgcaggcccaccaggccatggagcgagtgcacgtgcgctga
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