Sus scrofa (pig): 100152112
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Entry
100152112 CDS
T01009
Symbol
ABCA1
Name
(RefSeq) ATP-binding cassette sub-family A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc02010
ABC transporters
ssc04148
Efferocytosis
ssc04975
Fat digestion and absorption
ssc04979
Cholesterol metabolism
ssc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
100152112 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100152112 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
100152112 (ABCA1)
04979 Cholesterol metabolism
100152112 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100152112 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssc02000
]
100152112 (ABCA1)
Transporters [BR:
ssc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
100152112 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Talin_IBS2B
Motif
Other DBs
NCBI-GeneID:
100152112
NCBI-ProteinID:
NP_001304009
Ensembl:
ENSSSCG00000005423
ENSSSCG00000026173
Vega:
OTTSUSG00000002447
UniProt:
A0A4X1VEX4
A0A0A0R2Y4
LinkDB
All DBs
Position
1:complement(246144277..246278492)
Genome browser
AA seq
2261 aa
AA seq
DB search
MAYWTQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSQRDT
SMKDIHKVLRTLYQMERSRSGLKLRDFLADNETFSEFLHHNLSLPRPTVDKMLGADVRLR
KVFLQGYQLHLTNLCNGSKLEEVIQLGDQEVSRLCSLPREKLDAAEQVLRSNMDILKPIL
TQLNSTSPFPSKELAEATKALLDSLGNLAQELFSMKSWSDMRQEVMFLTNANSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEDDAGTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDMEGMWQELS
PKIWTFMESSSEMDLVRTLLNSRGSDHFWEKRLEGLDWTAKDIVAFLAKHPEDVQSMNGS
TYTWREAFNETNQAVQTISRFMECVNLNKIEPVATEARLINKSMELLDERKFWAGIVFPG
ITPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFTYLQDVV
EQAIIRVLTGVEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSLKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEESDEKSHPGSSQKGPSEICMEEEPTHLKLGVS
IQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYPKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVAEARLVEDI
GHELTYVLPYEAAREGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRVFGDKQSCLRPFTEDDAADPNDSDVDPESRETDLLSGMDGKGSYQVK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIILPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDVGTQELLNALTRKPGFGTRCMEGNPIPDKPCLVGEKEWITAP
VPQTIRDLFQNGNWTMANPSPACQCSSDKIKKMLPVCPLGAGGLPPPQRKQNTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGASNYQSLPPSEEVNDAIKQMKK
HLKVAKDSSADRFLSNLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTGGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVLLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLQPVQEFFG
HAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSVLSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttattggactcaactgaggttactgctgtggaagaacctcactttcagaagaaga
caaacatgtcagctgttgctggaagtggcctggcctctatttatcttcctgatcctgatc
tctgtgcggctgagctacccaccctatgaacaacatgaatgtcactttccaaacaaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgcaatgccaataacccc
tgcttccgttatccgactcctggtgaggctcctggggttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagatgctcggcggcttcttttgtatagccagagagacacc
agcatgaaggacatacacaaagttctgaggacattataccagatggagagatccagatca
ggcttgaagcttcgggacttcctggcagacaatgaaaccttctctgaattcctgcatcac
aacctctctctgccaaggcctactgtggacaagatgctgggggctgatgtcagactccgc
aaggtatttttgcaaggctaccagttacatttgaccaacctgtgcaatggatcaaaatta
gaagaggtgattcagcttggtgaccaagaagtctccaggctttgcagcctgccaagggaa
aagctggatgcagcagagcaagtactgcgttccaacatggacatcctgaagccgatcctg
acgcaactaaactccacatctcccttcccgagcaaggaactggctgaagccacgaaagct
ttgctggatagtcttgggaatctggcccaagagctattcagcatgaagagctggagtgac
atgcggcaggaggttatgtttctgaccaacgcgaatagctctagctcttccacccagatc
taccaggcagtgtcccgcatcgtctgtggccatcccgagggcgggggcctgaagatcaag
tcccttaactggtatgaggacaacaactacaaagccctctttggaggcaatggcaccgag
gatgatgctggcactttctatgacaattccacaactccttattgcaatgatttgatgaag
aatctggagtccagtcctctttcccgcatcatatggaaagctctcaagcctcttcttgtt
ggaaagatcctatatacaccggacactccagccacaaggcaggttatggccgaggtgaat
aaaaccttccaagaactggctgtatttcatgatatggaaggcatgtggcaagagctcagc
cccaagatctggaccttcatggagagcagctcagaaatggaccttgtccggacgctgttg
aacagcagaggcagtgaccacttttgggaaaagcgattggaaggcttagattggacagcc
aaagatatcgtggcttttctggctaagcacccagaggatgtccagtccatgaatggctcc
acgtacacctggagagaagccttcaacgagaccaaccaggcagtccagaccatctctcgc
ttcatggagtgtgtgaacctgaacaagatagaaccagtcgcaacagaggctcgactcatc
aacaagtctatggagctgctggatgagcggaagttctgggctgggatcgtgtttcctgga
atcaccccaggcagtgtcgagctgccccatcacgtcaagtataagatccggatggacatc
gacaatgtggagaggacgaacaagatcaaggatgggtactgggaccctggtcctcgggct
gacccctttgaggatatgcggtacgtctgggggggcttcacctacttgcaggatgtggtg
gagcaggcaatcatcagagtgctgacgggcgtggagaagaaaactggtgtctacatgcag
cagatgccctacccctgttacgtcgatgacatcttcctgcgggtcatgagccggtcaatg
cccctcttcatgaccctggcctggatttactcggtggctgtgatcatcaagggcatcgtg
tatgagaaggaggcgcggctgaaggagactatgcgcatcatgggcctggacaatggcatc
ctctggtttagctggttcatcagtagcctcatccctctgcttgtgagcgccggcctgctg
gtggtcatcctgaaattgggaaacctgctgccctacagcgaccccagcgtggtgttcgtc
tttctgtccgtgttcgccgtggtgaccatcctgcagtgcttcctgatcagcacgctcttc
tccagagccaacctggcggcagcctgtgggggtatcatttacttcacgctctacctgccc
tacgtcctgtgtgtggcgtggcaagactacgtgggcttctctctcaagatctttgctagc
ctgctgtctcctgtggcttttgggtttggctgtgaatacttcgcccttttcgaggagcag
ggcatcggggtgcagtgggacaacctctttgagagccccgtggaggaagatggcttcaac
ctcaccacctcagtctccatgatgctctttgacaccttcctgtacggggtgatgacctgg
tacatcgaggctgtgtttcctggccaatatggaatccccagaccttggtatttcccttgc
actaagtcgtactggttcggtgaggagagtgatgagaagagccaccctggttccagccag
aagggaccatcagaaatctgcatggaggaggagcccacccacctgaagctgggtgtgtcc
attcagaacctgatgaaggtttaccgagatggcatgaaggtggccgtcgacggcctagcc
ctgaatttctatgaaggccagattacctccttcctgggccacaatggagccggaaagacc
accaccatgtcaatcctgacagggttgttccctcccacctcgggtactgcctacattctg
ggaaaagacattcgctccgagatgagcaccatccggcagaacctgggggtctgtccccag
cataacgtgctgtttgacatgctgactgttgaagagcacatctggttctatgcccgcctg
aaagggctctcggagaagcacgtgaaggccgagatggagcagatggccctggatgtcggc
ttgccacccagcaaactgaaaagcaaaacaagtcagctgtcaggaggaatgcagagaaag
ctgtctgtggccttggcctttgtcgggggatccaaggttgtcattctggatgagcccaca
gctggtgtggacccttactcccgcaggggaatttgggagctgctgctgaaatatcgacaa
ggccgcaccatcattctctccacacaccacatggatgaggcggacatcctgggggacagg
attgccatcatttcccatgggaagctgtgctgcgtgggctcctccctgttcctgaagaac
cagctggggacaggctactacctgaccctggtcaagaaggatgtggagtcctccctcagc
tcgtgcagaaatagcagtagcactgtgtcgtacccgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacactgaccatcgacgtc
tccgctatctccaacctcatcaggaagcatgtggccgaggcccggctggtggaagacatt
ggacatgagctgacctacgtgctgccctacgaagctgccagagagggagcctttgtggaa
ctcttccatgagattgacgaccggctctcagacctgggcatctccagttatggcatctca
gagaccaccctggaagaaatattcctcaaagtggctgaagagagtggggtggacgctgag
acctcagatggcaccctcccagcgagacgaaacagacgggtcttcggggacaagcagagc
tgtcttcgcccattcactgaagacgatgctgctgatccaaatgattccgacgtagaccca
gaatccagggaaacagacctgctcagcggtatggacggcaagggctcctaccaagtgaag
ggctggaaactcactcagcagcagtttgtggcccttttgtggaagaggctgctgattgcc
aggcggagtcggaagggattttttgctcagattatcctgccagctgtgtttgtctgcatt
gccctagtgttcagcttgattgtgccaccctttggcaagtaccccagcctggaacttcag
ccctggatgtacaacgaacagtacacatttgtcagtaatgatgcacctgaggacgtgggc
acccaggaactcttgaatgccctcaccagaaagcctggcttcgggacccggtgtatggaa
gggaacccaatcccagacaagccctgcttggtgggggagaaggaatggatcactgcccca
gttccccagaccatcagggacctcttccaaaatgggaactggacgatggcgaacccctcc
cctgcctgccagtgtagcagtgataaaatcaagaagatgctgccagtgtgtcccctgggg
gcaggggggctgcctcctccacagagaaaacagaacaccgcggacatccttcagaacctg
acgggaagaaacatttcggattacctggtgaagacctatgtgcagatcatagccaaaagc
ttaaagaacaagatctgggtgaatgagtttaggtatggtgggttttccctgggtgccagt
aattatcagtcacttcctccgagtgaagaagttaatgatgccatcaagcaaatgaagaaa
cacttgaaggtagccaaggacagctctgcagatcgatttctcagcaacttgggaaggttc
atgacaggactggacacgaaaaataacgtcaaggtgtggttcaataacaagggctggcat
gccatcagttctttcttgaatgtcatcaacaatgccattcttcgggccaacctgcagaag
ggagagaaccccagccagtatgggattactgctttcaatcaccccctgaacctcaccaag
cagcagctctcagaagtggctctgatgaccacatcggtggatgtcctcgtctccatctgt
gtcatctttgcgatgtccttcgtcccagccagctttgttgtgttcctgatccaggagcgg
gtcagcaaagccaagcacctgcaattcatcagcggagtgaagcctgtcatctactggctc
tccaactttgtctgggacatgtgcaactatgtggtccccgccacgctggtcattatcatc
tttatctgcttccagcagaagtcctatgtatcctccaccaacctgcctgtgctagcactt
ctccttctgctgtatgggtggtccatcacacctctcatgtaccccgcctccttcgtgttc
aagatccccagcacagcctacgtggtcctcaccagcgtgaacctcttcatcggcatcaat
ggcagtgtggccacttttgtgctggagctcttcaccaacaacaagctgaataacatcaat
gatatcctgaagtctgtgttcttgatcttcccacatttttgcctgggacgggggctcatt
gacatggtgaaaaaccaggcaatggctgatgccttggaaaggtttggggagaatcgcttt
gtctcgcccctgtcttgggacttggtggggcgaaacctcttcgccatggccgtggaaggg
gtggtgttcttcctcatcacagtgctgattcagtacagattcttcatcagacccagacct
gtaaaggcaaagcttcctcctctgaatgatgaggatgaagatgtgaggcgggaaagacag
agaattcttgatggtggaggacagaatgatatcttggaaatcaaggagttgactaagata
tatagaaggaagaggaagcctgctgttgacaggatttgcgttggcattcctcctggcgag
tgctttggacttctgggtgttaatggggctggaaaatcatcaactttcaagatgttaact
ggcgataccactgttactggaggagatgcttttcttaacaaaaatagtatcttatcaaac
atccacgaagtacatcagaacatgggctattgccctcagtttgatgccatcacagagcta
ctgactggaagagaacatgtggagttctttgccctcttgagaggagtcccggagaaagaa
gttggcaaggttggtgagtgggcgattcggaaactgggcctcgtgaagtatggagagaaa
tatgctgggaactacagtggaggcaacaagcgcaagctctcaacagccatggctttgatc
ggtgggccccctgtggtctttctggatgaaccgaccacaggcatggatcccaaagcccgg
cgattcttgtggaattgtgccctaagtatcgtcaaggaaggaagatcagtattgcttaca
tctcatagtatggaagaatgtgaagctctttgcaccaggatggcaattatggtcaatggg
aggttcaggtgtcttggcagtgtccaacatctgaaaaataggtttggagatggttatacg
atagttgtacgaatagcagggtccaaccctgacctgcagccggtccaggagttctttgga
catgcctttccgggaagcgtcctgaaggagaagcaccggaacatgctgcagtaccagctt
ccctcgtccctgtcctccctggccaggatattcagcgtcctttcccagagcaaaaagcga
ctccacatagaagactactcagtttctcagacaacacttgaccaagtatttgtaaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcattacataaaaaccagaca
gtagtggatgttgctgttctcacatcttttctgcaggatgagaaagtgaaagaaagttac
gtgtga
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integrated database retrieval system
