Sus scrofa (pig): 100152410
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Entry
100152410 CDS
T01009
Symbol
TARBP1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssc03016
]
100152410 (TARBP1)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100152410 (TARBP1)
Enzymes [BR:
ssc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
100152410 (TARBP1)
Transfer RNA biogenesis [BR:
ssc03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
100152410 (TARBP1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100152410 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
100152410
NCBI-ProteinID:
XP_005671024
Ensembl:
ENSSSCG00000010160
LinkDB
All DBs
Position
14:56669564..56746542
Genome browser
AA seq
1622 aa
AA seq
DB search
MEWVLADALLSQSRDPRVLLGALCRGEASAERVETLRFLLQRLEDEEARGGGAGALPEAA
HEVAAGYLVPLLRGLPGRLMGGADTGPPARQRRRVLRAAGAALRSCARLAGGPQLAAALA
EEALRDLLAARPAPGLEGACEAAVEVLAAVGPCLRPLEDAPLLERVAQAALALALGGDEA
GPSEDAVALVAGRLLPALGQCGGAALRAVWGGLVAPGPPLGPGLVGPQLLVLSALAEKLL
PEPGVDCAPAAREAGPDARRCWRFWRTVQAGLAWAEDALTRKRARYLLQRAVEVSAEQGA
DYACAPGEETGPSLFWWSEKKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNNLFEY
AVSEENGCWLFHPSWHLCIYKRMFESENKILTKEGVTHFLELYETRVLPFSPEFSEFIIG
PLMDALSESSLYSRSPGQLIGSGSPLGLKLQKFLVTYISLLPEEIKSSFLLKFIQKMTSR
HWCAIPILFLSKALASVPRCKALGVEGLLALRDVLQCTMITHQILLRGAAQCYLLRAAIN
LVDVEKVSLSDMATFLMSVRQEESLGRGTSLWTELCDWLCVHESCFRRNSPSSSVGLAET
SFLNAYVKNLIHEYIKSPAWERGENCCMPDWFEAKLVAMMVLLAVDVEGMKSQYSEKRRT
QNVLRIFLDPLLDALVKFGTNAYMPLLKTDRCLQLLLKLLHTCLLKGSGTQDVAQSFFPH
TDEVSTLLQNFVMSTTESISEFILRRLTMNELSSVSDLDRCHLYLMVLTELINLHLKTGW
KRGNPIWRVISPLINASIRHLQETGSGQEPTLGTQIQRAVSMAALAKVCEAIDQKSELQP
DSLDAGPMERFLSSLQLNQTLQKPLTEEDGSFSEESSSSQGWGKIVAQYIHDQWVCLSFL
LKKYHTLIPTSESEILEPVLPAVQMPVRTLQSALEALTILPSDQVLPVFHCMKILVPKLL
TSCESLCIESFDMAWKIIASLSNTQLVFWPNLRAFVQFVFDPKVLTIAAKTKGQTYFKIK
EIMYKIIEMSAMKTGVFNILISYCCQSWIVSASNVSQGSLSSANNYSELVLEACVFGTVF
RRDQRLIQDIQTFVENLGHDCAANVVIENTKREDHYVRICAVKFLCLLDGSNMSHKLFIE
DLAVKLLDKDELVSKSKTRYYVNSHQHRVKNRIWQTLLVLFPRFDQNFLNRIIDKIFQAG
FINNQASIKYFIEWIIILILHKFPQFLPKFWDCFSYGEENLKTSICTFLSVLSHLDIITE
NIPEKKLILKQALIIVLHWCFNHNFSIRLYAMVALKKIWSMCKSLHIEELDALTSVIESS
LDQVENMHGAGNAKKNWQRIQEHFFFATFHPLKDYCLETIFYVLPRLSGLVEDEWIAIDK
FTRFTDIPLDTGFQWYLSPTQLCELTPSDWSQQDIGPHSGEADNQSEWADVQKKIIPWKN
NVPDLDLELVFQDRAARLGKSISRLVVVASLIDKPTNLGGLCRTCEVFGASALVVSSLQC
IRDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQFCFPE
KSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRPGDA
GS
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggtgctggcggatgcgttgctgtcgcagagccgggacccacgggttctgctt
ggggcgctgtgccgcggggaggcgtccgcggagcgcgtggagacgctgcgctttcttctg
cagcggctcgaggacgaggaagcacgcggcggcggcgcgggcgcgctcccggaggcggcg
catgaggtggccgccgggtatctggtgccgctgctgcggggcctgccggggcgcctcatg
ggcggcgcggacaccggccccccggcccgccagcgccggcgcgtgctgagggcggcgggc
gcggccctgcgctcgtgcgcccgcctcgccgggggcccgcagctggcggccgctctggca
gaggaggcgctgcgtgacctgctcgccgcgagacctgcacccggcctcgagggggcctgc
gaggccgccgtggaggtgctggcggccgtggggccctgcctgcggcccctcgaggacgcg
ccgctgctggagcgggtggcgcaggccgccctggccctggcgctgggcggggacgaggcg
gggccctccgaggacgcggtggcactggtggccgggcgactgttgccagcactgggccag
tgcggcggggcagcgctgcgggccgtgtggggagggctggtcgcgcccgggccccccttg
gggccgggcctagtagggccacagctcttggtgctgagcgccttggccgagaagctgctg
cccgagcccggcgtggactgtgccccggcggcacgcgaggcgggcccagacgcccggcgc
tgctggcggttttggaggacagtgcaggctgggctggcctgggccgaggatgccctgacg
cgcaagcgggcgcgctacctgctgcagcgggctgtggaagtgtcggcggaacagggggcc
gattacgcgtgcgccccgggagaagaaaccggcccaagtctattttggtggtctgagaag
aaaaaagatgagcttctaaagttttgggaaaactatattttaattatggaaactcttgaa
ggaaatcagatacatgttataaagccagttttaccaaagctaaacaatctgttcgaatat
gcagtgtcagaggaaaatggatgttggctctttcacccatcttggcatctgtgtatttat
aaaagaatgtttgaaagtgaaaataaaatcctgaccaaagaaggtgttactcactttttg
gagctgtatgaaaccagggttcttccgttttcaccagaattttctgagtttattattgga
ccattaatggatgcactttcagagagctctctgtatagcaggtccccaggccagctgata
ggaagtggctctccactgggattgaaattacagaagtttttagtcacttacatttccctt
cttccagaagaaataaagagtagtttcctgttaaaatttattcagaagatgacaagtaga
cattggtgtgctattcccattttgtttctctctaaggctctggccagtgttccgagatgt
aaagctctgggtgtagaaggccttcttgccctcagggacgtcctgcagtgcaccatgatc
acacaccagatcctgctgagaggggcggcccagtgctatctccttcgggcggctatcaac
ctggtagatgtggagaaagtgtccctttctgacatggcgacttttctcatgtctgtgaga
caagaggagtccttaggacgcggaacctcgttgtggacagagctctgtgattggctgtgt
gttcatgagagctgttttaggcgaaactcgcctagtagctccgttgggcttgctgagaca
tcctttttaaatgcttatgtaaagaacctcatccatgaatatattaagtcgcctgcctgg
gaaagaggcgaaaactgctgtatgcctgactggtttgaagccaagcttgttgctatgatg
gtcttgctggccgtggatgtggaaggaatgaagagtcaatatagtgaaaagcggagaaca
cagaatgtattaaggatattcttagatcctcttctggatgcccttgtgaagtttggtacc
aatgcctacatgcctttgctgaaaactgacagatgcctgcagttgctgttgaagttactg
cacacttgcttgttgaaaggttccggtacccaagatgttgcacagtctttttttccccat
acagatgaggtgtcgactcttcttcaaaactttgttatgtccactacggagagcatttct
gaatttattcttagaagacttaccatgaatgaactaagtagtgtttcagatctggatcgt
tgccatttatatctgatggtattaactgagcttataaatctccatttgaagactgggtgg
aaaagaggtaaccctatttggagagttatttctcctttgataaatgcatccatccggcat
cttcaggagacgggaagtggacaggagccgacgctgggcacacagattcagagagccgtc
agcatggctgccttggccaaggtctgcgaggccatcgaccagaagtcagagctgcagcca
gactccctggatgcaggccccatggaaaggttcctctcctcccttcagctcaaccagacg
ctgcagaagcccctcaccgaggaggacggcagtttttccgaggaatcatcatcttcccaa
ggatgggggaaaatagttgcacaatatattcatgaccagtgggtctgcctctctttcttg
ttgaaaaaatatcacacccttataccaacctcagagagtgaaattctggaacccgttctc
cctgctgttcaaatgccagtaaggactttgcagtctgcactagaagccctcacaattctt
ccttccgatcaagttttacctgtgttccattgcatgaagattttggttcccaagcttctg
acctcctgtgaatcactctgcatagagtcttttgacatggcctggaaaatcatagcttct
ttaagcaacactcaactggtattctggcctaatttaagagcttttgttcaatttgttttt
gatcccaaagttctgaccattgctgcaaaaaccaagggccagacgtatttcaaaataaaa
gagattatgtacaagataattgaaatgtcggctatgaaaactggagtcttcaatatattg
ataagttattgctgccaatcttggatagtttctgcttcaaatgtgtcccaaggatcttta
tcaagtgctaacaattacagtgaacttgtcctggaggcgtgtgtatttgggacagtgttt
cggcgtgatcagaggcttatccaggatatacagacctttgtagaaaatctcggacatgat
tgtgcagcgaatgttgttattgaaaatactaaaagagaggaccattatgtgagaatttgt
gctgtcaaattcctgtgtttattagatggctcaaatatgtctcataagttgttcatagaa
gatcttgcagtcaaactattagataaggacgagttggtgtccaagtctaagactcgatac
tatgtgaattctcaccaacacagagtgaaaaaccggatatggcagactctgctggtactt
ttccccagattcgatcagaatttcttaaacagaattattgacaagattttccaggctggt
ttcatcaataatcaagcatccataaagtattttatagaatggattattatactgattctt
cataaattcccccagtttcttccaaagttctgggactgtttttcttatggcgaagaaaac
cttaaaacaagcatttgtacctttttatcagttttgtcacatttggacatcattactgaa
aatattccagaaaagaaactgattctgaagcaagcccttattatcgtactgcactggtgt
tttaatcataacttcagcattcgactgtacgccatggttgctcttaagaaaatctggagc
atgtgtaaatcattgcacattgaagaacttgacgctctgacttctgttattgagtccagt
cttgaccaggtggagaacatgcatggagcagggaacgccaagaagaattggcagcgcatc
caagaacatttcttctttgcaacatttcacccacttaaggattactgtctcgagaccata
ttttacgtccttccgcgcctctccggccttgtcgaagatgaatggatcgccattgataaa
tttaccaggttcactgacattcctttagatacaggatttcagtggtacctttctccaact
cagctctgtgaactgacaccaagtgactggtctcagcaggacataggtcctcactcaggt
gaagcagataaccagtcagagtgggctgatgttcagaagaagattatcccatggaaaaat
aatgttccagacttagacctggagctggtgtttcaggatcgtgctgctagactcggaaaa
tcaatcagtaggctggttgtagtggcctcactcattgataagccaaccaatttaggaggg
ctttgccggacctgcgaggtgtttggcgcctcggcccttgtcgtcagcagccttcagtgc
atcagagacaagcagtttcagcacctcagtgtttcagcagagcagtggcttcctttagtg
gaggtcaaaccacctcagctaatcgattatctgcaagagaaaaaagcagaaggttacacc
atagtgggtgtggaacaaactgccagaagtgtagacctaacccagttctgctttcctgag
aagtccctcctcttgttgggcaatgaacgtgaaggaatcccggcaaatctgattcagcag
ctggatgtgtgtgtggagattcctcagcagggaatcatccgctccctcaacgtccatgtg
agcggagctctgctgatctgggaatacaccagacagcagctcctgaggcccggggacgct
gggtcctga
DBGET
integrated database retrieval system
