Sus scrofa (pig): 100152442
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Entry
100152442 CDS
T01009
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100152442 (RC3H2)
04121 Ubiquitin system [BR:
ssc04121
]
100152442 (RC3H2)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100152442 (RC3H2)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100152442 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
Xin
zf-RING_10
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
100152442
NCBI-ProteinID:
XP_013849289
Ensembl:
ENSSSCG00000005575
UniProt:
A0A4X1UHA7
A0A8D1ABB2
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All DBs
Position
1:complement(263769403..263822101)
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AA seq
1190 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKNYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
GSTETTGKIVPSTNGVSNAENSVSQLIPRSTDSTLRALETVKKVGKVGTNGQNAAGPSAE
SVTENKIGSPPKTPVSNVTATSAGPSNVGTELNSVPPKSSPFITRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQAGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FSPRDRMNSTPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPMYQRDDIIRSNSLPPM
DVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTSCEEQIRRKPE
QWAQQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRTDFSESVSGTKFEEDHLSHYSPW
SCGTIGSCINSIDSEPRDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEAT
SSAHYIERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGRHLTLNLLSKEIELRNGESDYTEDATDTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQNDQLLNGTAVENGHPVQQHQKEPLEQKRQSLGEDHVILEEQKAILPVTSCFS
QPLPVSISSASCLPITTSVSVGNLILKTHVMSEDKNDFLKPVANGKMVNS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcttgtccttttgaccagactgccatcaacacagac
attgatgtgcttcctgtcaacttcgcacttctccagttagttggagcccaggtaccagat
catcagtcaataaagttaagtaatctaggtgagaacaaaaactatgaggttgcaaagaaa
tgtgttgaggatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgctctgagccgtccaatgcaaaggaaactcgtgacacttgtaaactgt
cagctggtagaggaagaaggtcgtgtaagagccatgcgagcagcccgttcacttggagaa
agaactgtaacagaactaatattacagcatcagaaccctcagcaactgtctgccaaccta
tgggctgctgtcagggctcgaggatgccagtttctaggaccagctatgcaagaagaggcc
ttgaagctggtgttgctggcattagaagatggttctgctctctcaaggaaagttctggta
ctttttgttgtgcaaagattagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagggacgaagac
tcttccctgatgcagttaaaggaggaatttcggagttatgaggctttacgcagagaacat
gatgcccaaattgttcatattgctatggaagcaggactccgtatttcacctgagcagtgg
tcctcacttctgtacggtgacttggcacataagtcccacatgcagtctattattgataag
ctgcagtctccagaatcatttgcaaagagtgttcaggaattgacaattgttttgcaacga
acaggtgacccagctaacttaaatagactgaggcctcatttagagcttcttgcaaacata
gaccctaatccagatgctgtttcaccaacttgggagcagctagaaaatgcaatggtagct
gttaaaacagtggttcatggccttgtggacttcatacaaaattatagtaggaaaggccat
gagacacctcagcctcaaccaaacagcaaatataagactagcatgtgccgagatttgcga
cagcaaggagggtgtccacgaggaacaaattgtacttttgcccattctcaggaagagctt
gaaaagtatcgattaagaaacaaaaagattaatgcgactgtaagaacgtttcctcttcta
aataaagttggtgtaaacaacaccgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaacggggaaaattgttccaagtacaaatggagtttcaaatgcagag
aacagtgtttcccagctcattccacgtagtactgacagtacattaagagctctggagact
gtgaagaaagtggggaaggttggcactaatggtcagaatgctgctgggccttctgcagag
tctgtaactgagaataaaattggttctccacccaagactcctgtaagtaatgtaacggct
acctcagctgggccctctaatgttggaactgagctgaattctgtgcctcccaaatccagc
ccatttataactagagtaccagtgtatcctcagcattctgaaaacatccagtattttcaa
gatccaaggactcagataccctttgaagtcccacagtacccacaggcaggatactatcca
ccacctccaacggtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagagtcctccctcccacctgcttccatgccatatgctgatcattacagtaca
ttttcccctcgagatcgaatgaattctactccttaccaacctcctcctccgcagccgtat
ggaccagttcctccagtaccttctggaatgtatgctcctgtgtacgacagcaggcgcatc
tggcgcccacctatgtaccaacgagatgacattattagaagcaattctttacctccaatg
gatgtgatgcactcatctgtgtatcagacatctttgcgggaaagatataactcattagat
gggtattattcagtggcttgtcagccaccaagtgagccaaggacaactgtgcctttacca
agggaaccttgtggtcatttgaagaccagttgcgaggagcaaataagaagaaagccagag
cagtgggcacaacagtaccacactcagaaagcacctcttgtctcttcaactcttcctgtg
gcaacacagtcaccaacaccaccttctcctctattcagtgtagactttcgcactgatttc
tctgaaagtgtgagtggcacaaaatttgaagaagatcatctttcccattattctccctgg
tcttgtggcaccataggctcctgtataaattccatcgattcagagcccagagatgtaatt
gctaattcaaatgctgtgttaatggacctggacagtggagatgttaagagaagagtgcac
ttatttgaaactcagagaaggacaaaagaagaagatccaataattccttttagtgatgga
cctatcatctcaaaatggggtgcaatttctagatcttcacgtacaggttaccataccacg
gatcctgtccaggccactgcttcccaaggaagtgcaactaagcccatcagcgtatcagat
tatgtcccttatgtcaatgctgttgattcaaggtggagttcatatggtaacgaggctaca
tcatcagcacactatattgaacgggacagattcattgttactgatttatctggtcatagg
aagcattccagtactggagatcttttaagcattgaacttcagcaggccaagagtaactct
ttgcttcttcagagggaggccaatgctctggccatgcaacagaagtggaattccctggat
gaaggccgtcaccttaccttaaatcttctaagcaaggaaattgaactgagaaatggagag
agtgactatacggaagatgcaactgatactaagcctgatagggatattgagttagagctt
tcagcacttgatactgatgaacccgatggacaaggtgaacaaattgaagagatcctagac
atacagcttggtatcagttctcaaaatgatcagttgctgaatggaacagcagtagaaaat
gggcatcccgtccagcagcaccagaaggagcctctggagcagaagagacagagtttaggt
gaagaccatgtgattctggaggagcaaaaagcaattctgccggtaacttcttgctttagc
cagccactcccagtctccattagcagtgcgagttgcctccccatcaccacatctgtcagt
gttggcaacctcattctgaaaactcatgttatgtctgaagataaaaacgactttttaaaa
cctgttgcaaatgggaagatggttaacagctga
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