Sus scrofa (pig): 100152904
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Entry
100152904 CDS
T01009
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03082
ATP-dependent chromatin remodeling
ssc04714
Thermogenesis
ssc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100152904 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100152904 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100152904 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100152904 (ARID1B)
03021 Transcription machinery [BR:
ssc03021
]
100152904 (ARID1B)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100152904 (ARID1B)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Helix-turn-helix
ARID
100152904 (ARID1B)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100152904 (ARID1B)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100152904 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
100152904
NCBI-ProteinID:
XP_020927531
Ensembl:
ENSSSCG00000004064
ENSSSCG00000026021
LinkDB
All DBs
Position
1:complement(9791627..10227381)
Genome browser
AA seq
2372 aa
AA seq
DB search
MLGGGGDGGGLNNVHHHPLHPRHELNMAHNASAAAAAASTNSAKSGGSEAALKEGGSAAA
LSSSSSAAASSSSSSLGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHA
HHLHHHHHALQQQLNQFQQQQQQQQQQQQHPISNNNSLSGAGGGTAQPGPDMEQPQHGGA
KDSAAGSQADPPGQPLLSKPGDEDDAPPKMGEPAGGRYEQPGLGALGAQPPPVAVPGGGS
SGGGPAAVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASATAGAPNSM
DPLQNSHEGYPNSQYNHYPGYSRPSAGGGGGGGGGGGGGGGGGGGGGGGSGGGGGGGGAG
AGAVAAAAAAAAAAAGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAG
AAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSPSAPPPPPPPSQPQ
SQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQ
GSPMDPMVMKRPQLYGMGGNPHSQPQQSSPYPAGSYGPPGPQRYPIGIQGRTPGAMGGMQ
YPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPHLPPQAQYLPSQSQQRYQPQQDMSQE
GYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLTSEDTAFGLKDLSGSIDDLPTGTE
AALSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGP
ISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQYGAQQTGPS
MSPHPSPGGQMHPGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPG
MGINANNQMHGQGPSQPCGALPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGP
PMPTVNRKAQEAAAAVMQAAANSAQSRPPYIRSPAYPSQSGAGGRPMFSSQHPNYGNSQA
PMMHQPDQYGQGAFPGMNQSGLMASSSPYSQPMNNSSGLINTQAPPYSMTPNMVNSSTAS
MGLADMMSPGESKVPLPLKADGKEEGAAQPESKSKDSYSSQGISQPPTPGNLPVPSPMSP
SSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKLWVDRYL
SFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGTSSSA
ASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQS
TGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTVSVHDPFSDASDASFPKRNSMTPS
APYQQGMSMPDVMGRMPYEPNKDPFGGMRKVPGSSEPFMTQGQMPTSSMQDMYNQSPSGA
MSSLGMGQRQQFPYGASYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQTNYKRHMD
GMYGPPAKRHEGDVYNMQYGNQQQEMYNQYSGSYSGPDRRPIQGQYPYPYNRERMQGPGQ
IQPHGIPPQIMGGPMQSSSSEGPQQSMWATRNDMPYPYQNRQGPGGPAQAPPYPGMNRTD
DMMVPDQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPA
SFQRSLESRLSPSKSPFLPAMKMQKAMPTVPTAQVAGPPPQPPPIRREITFPPGSVEASQ
PVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLS
GFLELLVEYFRKCLIDIFGILMEYEVGDPSQKALDHNAVKRDDSQSLADESGKEEEDAEC
MDEEEDEEEDEEEGGGKPEPEDRSGTALASPDATADPKEKPRQASKFDKLPIKIVKKNNL
FVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPPLSSTGRKK
DQEGKADSEEQQEKSIIATIDDVLSARPGALPEDANPGTQAESSKFPFGIHQAKSHRNIK
LLEDEPRSRDEAPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGK
LILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDL
SAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVD
LILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAIAVQKGSIG
NLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLL
HEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7119 nt
NT seq
+upstream
nt +downstream
nt
atgctggggggcggcggcgacggcggcggcctgaataatgtgcaccaccaccccctgcac
ccccgtcacgaactgaacatggcccataacgcgagcgcggcggccgccgccgccagcact
aacagcgccaagagcggcggctccgaggcggctctgaaggagggtggaagcgccgccgcg
ctgtcctcctcctcctccgcggcggcgtcctcctcttcctcctcgttgggcccgggctcg
gccatggagacggggctgctccccaaccacaaactgaaaaccgttggcgaagcccccgcc
gcaccgccccaccagcagcaccaccaccaccaccatgcccaccaccaccaccaccatgcc
caccacctccaccaccaccaccacgcactacagcagcagctaaaccagttccagcagcag
cagcagcaacagcagcagcagcagcaacatcccatttccaacaacaacagcctcagcggc
gcgggcggcggcacggctcagcccggtcccgacatggagcagccgcaacatggaggcgcc
aaggacagtgccgcgggcagccaggccgaccccccgggccagcctctgctgagcaagccg
ggcgacgaggacgacgcgccgcccaagatgggggagccggcaggcggccgctacgagcag
ccgggcctgggcgccctgggcgcgcagccgccgccggtcgctgtgcccgggggcggcagc
agtggcggcggcccggcggccgtctcggagtttaataattactatggcagcgctgcccct
gctagcggcggccccggcggccgcgctgggccttgctttgatcaacatggcggacaacaa
agccccgggatggggatgatgcactccgcctcagccaccgccggagcccccaacagcatg
gaccccctgcagaactcccacgaagggtaccccaacagccagtacaaccattatccgggc
tacagccggcccagcgcgggcggcggcggcggcggcggcggtggcggaggaggaggagga
ggaggaggaggaggaggaggaggaggcagcggaggaggaggaggaggaggaggagcagga
gcgggagctgtggcggcggcggccgcggcggcggcagcagcagcaggaggcggcggcggc
ggctatgggggctcgtcctcggggtacggggtgctgagctccccccggcagcagggcggc
ggcatgatgatgggccccgggggcggcggggccgcgagcctcagcaaggcggccgccggc
gcggcggcggggggcttccagcgcttcgccgggcagaaccagcacccgtcgggggccacc
ccgaccctcaaccagctgctcacctcgcccagccccatgatgaggagctacggcggcagc
taccccgactacagcagccccagcgcgccgccgccgccgccgccgccgtcgcagccccag
tcccaggcggcggcggcgggggcggcggcgggcggccagcaggcggccgcgggcatgggc
ttgggcaaggacatgggcgcccagtacgccgctgccagcccggcctgggcggccgcgcaa
caaaggagccacccggcgatgagccccggcacccccggcccgaccatgggcagatcccag
ggcagcccaatggatcccatggtgatgaagagacctcagttgtatgggatgggtggtaac
cctcattctcagccacagcagagcagcccttacccggcaggttcctacggccccccgggc
ccacagcggtatccaatcggcattcaaggtcggaccccaggggccatggggggaatgcag
tatccacagcagcagatgccccctcagtatggacagcaaggtgtgagtggttactgccag
cagggccagcagccttactacaaccagcagccacagcctccgcaccttcccccgcaggcg
cagtatctgccatcccagtcccagcagaggtaccagccacagcaggacatgtctcaggaa
ggctatggaactaggtctcaacctcctctggctcccggaaaacctaaccatgaagacttg
aacttgatacagcaagaaagaccgtcgagtttaccagttgaagtcttgacctcggaggat
actgcctttggactcaaggacctgtctggctccatcgacgacctccccacgggaacggaa
gcagctctgagctctgcagtcagtgcatccgggtccacgagcagccaaggggatcagagc
aacccagctcagtcgcctttctctccacacgcatctccccatctctccagcatccctggg
ggcccatcgccttctcctgtcggctctcctgtcggaagcaaccagtcacgatctggccca
atttctcctgcaagtattccaggcagtcagatgcctcctcagccacctgggagccagtca
gaatccagttcccatcctgccttgagccagtccccaatgccgcaggaaagaggttttatg
gcaggcacacaaagaaaccctcagatgtctcagtatggagctcagcagacaggaccatcc
atgtcgcctcatccttctcctggaggccagatgcatcccggaatcagtagctttcagcag
agtaactcaagtgggacttacggtccacagatgagccagtatggaccacaaggtaactac
tccagacccccaacgtatagtggggtgcccagtgcaagctacagcggcccagggcccggc
atgggcatcaatgccaacaaccagatgcatggacaagggccaagccagccatgtggtgct
ctgcccctgggacgaatgccatcagctgggatgcagaacaggccatttcctggaaatatg
agcagcatgacccccagctctcctggcatgtctcagcagggagggccaggaatggggcca
ccaatgccaaccgtgaaccgtaaggcacaggaggcagctgccgcagtgatgcaggccgct
gcaaactcggcccaaagcaggccaccatacattaggtcgcctgcttatcccagccagtct
ggggctggcggacgccccatgttttcttcccagcaccccaactatggcaactctcaggct
cccatgatgcaccagcctgaccagtacgggcaaggtgcttttcccggcatgaaccagagt
ggacttatggcttccagctctccctacagccagcccatgaacaacagctccgggctgatc
aacacccaggcgcccccctacagcatgacgcccaatatggtgaacagctcaacagcatct
atgggtcttgcagatatgatgtctcctggggaatccaaagtgcccctgcccctcaaagca
gatgggaaggaagaaggcgctgcccagccggagagcaagtcgaaggatagctacagctct
cagggtatttctcagcccccaacccccggcaacctgccagtcccttccccaatgtccccc
agctctgctagcatctcctcatttcatggagatgaaagtgatagcattagcagcccaggc
tggccaaagactccatcaagccctaagtccagctcatccaccaccacgggggagaagatc
accaaggtgtatgagttggggaacgagccggagcgaaagctgtgggtggaccgatacctc
agcttcatggaggagaggggctcccccgtctcgagtctgcccgccgtgggcaagaagccc
ctggacctgttccgactctatgtctgcgtcaaagagattggaggtttggcccaggtgaat
aaaaacaagaagtggcgtgagctggcaaccaccctaaatgttggcacttcaagcagtgca
gcaagctctctgaaaaagcagtatattcagtacctgtttgcctttgagtgcaagattgag
cgaggggaggagcccccgccggaagtcttcagcacgggcgacaccaagaagcagcccaag
ctccagccgccctctcctgctaactcaggatccttgcaaggtccacagaccccccagtca
actggcagtaattcgatggcagaggttccaggtgacctgaagccacctactccagcctct
acccctcatggacaaatgaccccaatgcaaggcggaagaagcagtacagtcagtgtgcac
gacccattctcggacgcaagtgatgcatcgttccccaaacgcaactccatgactccgagc
gccccctaccagcagggcatgagcatgccggacgtgatgggcagaatgccctacgagccc
aacaaggacccctttggaggaatgagaaaagtgcctggaagtagcgagccgtttatgacg
caaggacagatgcccaccagcagcatgcaggacatgtataaccagagtccgtctggagcc
atgtccagtctaggcatggggcagcggcagcagtttccctatggggccagttacgatcga
aggcatgaaccttacgggcagcagtacccaggccaaggccctccctcaggacagccgcca
tatggaggacaccagccaggcctgtacccacagcagacgaattacaagcgccatatggac
ggcatgtatgggcctcccgccaagcgccacgagggagacgtgtacaacatgcagtacggc
aaccagcagcaggagatgtacaaccagtacagcggttcctactcgggcccggaccggcgg
cccatccaggggcagtacccgtacccctacaacagagagcggatgcagggcccgggccag
atacagccccacggcatcccgccccagatcatgggtggcccgatgcagtcgtcctccagc
gaagggcctcagcagagtatgtgggccacgcgtaacgatatgccttacccctaccagaat
aggcaaggccccggcggccctgcacaggcacctccctatccaggcatgaaccgcacggat
gatatgatggtacctgatcaaaggataaatcacgagagccagtggccttctcacgtcagc
cagcgtcagccttacatgtcctcttcagcctccatgcagcccatcactcgcccgcctcag
tcctcctaccagacgccaccgtcactgccaaatcacatctcccgagcgcccagccccgcg
tccttccagcgctccctggagagccgtctgtctcccagcaagtcccccttcctgcccgcc
atgaagatgcagaaggccatgcccaccgtccccacggcccaggtcgcggggccgcccccg
cagccaccccccatcagaagggagatcacctttcctcccggctctgtggaagcctcacag
ccagtcttgaaacaaaggcgaaagattacctcaaaggatatcgttactcctgaggcctgg
cgtgtgatgatgtcccttaagtcaggtctcctggccgagagtacttgggctttggacact
attaacattcttctgtatgatgacagcacggtcgctacgttcaatctctcccagttgtcc
ggatttctcgagcttttagtagagtactttaggaaatgcctgattgacatttttgggatc
cttatggagtacgaagtgggagaccccagccaaaaagcacttgatcacaacgcggtaaag
agagatgacagccagtccttggccgatgagtctgggaaagaggaagaagatgctgaatgt
atggatgaggaggaggacgaggaggaggacgaggaggagggcggtgggaagccggagccg
gaggacaggagcggcacggctttggcctcccccgacgccaccgcagacccaaaggagaag
cccaggcaagccagcaagttcgacaagctgccgataaagatagtcaaaaagaacaacctg
tttgtggtcgaccggtctgacaagctgggtcgtgtccaggagttcagcagcgggcttctg
cactggcagctcggaggcggggacaccaccgagcacatccagactcactttgagagcaag
atggaaattcctcctcgcaggcgtccgcctcccccgttaagctccacaggcaggaagaaa
gaccaggaaggcaaagcggattctgaagagcagcaggagaaaagcatcatcgcgaccatt
gatgacgtcctgtctgcccggccaggggctctgcccgaagacgcgaaccctggtacccaa
gccgaaagcagtaagttccccttcggaatccatcaagccaaaagtcaccgcaacatcaag
ctgctggaggacgagccgaggagccgggacgaggccccgctctgcaccatcgcgcactgg
caggactcgctggctaagcgctgcatctgcgtgtcgaatatcgtccggagcttgtccttt
gtgcctgggaatgacgccgaaatgtccaaacatccaggcctggtgctgatcctggggaag
ctgattcttcttcaccacgagcatcccgagagaaaacgagcgccgcagacctacgagaag
gaggaagacgaggacaaaggggtggcctgcagcaaagatgagtggtggtgggactgcctc
gaggtcttgagggataacacgttggtcactttggccaacatttctgggcagctagacttg
tctgcgtacacggaaagcatctgcttgccaattttggatggcttgctgcactggatggtg
tgcccgtctgcggaggcacaggacccctttcccaccgtgggccccaactctgtcctgtcg
cctcagagacttgtgctggagacgctgtgtaaactcagcatccaggacaataatgtggac
ctgatcttggccacgcctccatttagtcgtcaggagaaattctatgccacgttagttagg
tacgttggggatcgcaaaaacccagtctgtcgagaaatgtccatggcgcttttgtcgaac
cttgcccagggggacgcgctggctgccagggcgatagctgtgcaaaaggggagcattggc
aacttgataagcttcctagaggatggggtcaccatggcccagtatcagcagagccagcat
aacctcatgcacatgcagcccccgcctctagagccccctagcgtggacatgatgtgcagg
gcggccaaggctctgctggccatggccagagtggacgagaaccgctcagaattccttctg
cacgagggtcgattgctggatatctcgatatcagctgtcctgaactctctggttgcgtct
gtcatctgtgatgtactgtttcagattgggcagttatga
DBGET
integrated database retrieval system
