KEGG   Sus scrofa (pig): 100153708
Entry
100153708         CDS       T01009                                 
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X10
  KO
K23625  ataxin 2/2L
Organism
ssc  Sus scrofa (pig)
Pathway
ssc05014  Amyotrophic lateral sclerosis
ssc05017  Spinocerebellar ataxia
ssc05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100153708 (ATXN2)
   05017 Spinocerebellar ataxia
    100153708 (ATXN2)
   05022 Pathways of neurodegeneration - multiple diseases
    100153708 (ATXN2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100153708 (ATXN2)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100153708 (ATXN2)
SSDB
Motif
Pfam: SM-ATX LsmAD PAM2 LSM
Other DBs
NCBI-GeneID: 100153708
NCBI-ProteinID: XP_001929568
Ensembl: ENSSSCG00000009834
LinkDB
Position
14:complement(32656537..32772082)
AA seq 1299 aa
MRSAAAAPRGPAAAIEPRRFAAARWPGRRSLPRPARRGGRGGSGGAPRPYPSAAPPPPGP
GPPPSGQRSPPSASDCFGSNGNGGGAARPGSRRLLGFGGPPRPFVVLLLPLARPGAPPAA
PTSASSLGARASPPRSGVSSARPAPGCPRPACGPVYGPLTMSLKPQQQQQQQQQPTAANA
RKPGGSGGLLTSPAAAPSPTSSSVSSSSAAASSSSTVAAASAGGGRPGLGRGRNSSKGLP
QSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKST
ESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARRDAFTDSAISAKVNGEHKEKDLEP
WDAGELTTNEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEE
FLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNSSEREGHSINTRENKY
IPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWP
SPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPK
RMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHTSPSEAAAPPAARTSPAGGTW
SSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGVIPTDAVPMPLPAASPTPAS
PASNRAVTPSIEAKDSRLQDQRQNSPAGNKENMKSNETSPSFPKAESKGISPVVSEHRKQ
IDDLKKFKNDFRLQPSSASESVDQLLNKSREGEKSRDVIKDKIEPNAKDSFIENSSNCTS
GSSKPSSPSISPSILSNTEHKRGPEVTSQGVQTSSPGCKQEKDDKEETKDAAEQVRKSTL
NPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPV
SPGVQPLYPIPMTPMPVNQAKTYRAVPNIPQQRQDQHHQSTMMHPASAAGPPIVATPPAY
STQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQ
YGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPT
GQQQNQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSP
QNSFPTAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPP
GGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL
NT seq 3900 nt   +upstreamnt  +downstreamnt
atgcgctcggcggccgcagctcctcggggccccgcagcggccatcgagcctcgtcgcttc
gccgcggccaggtggcccgggaggcgctcgctcccgcggccggcgcggcggggcgggcgg
ggcggcagcggcggggctccaagaccgtatccctccgccgcccctcccccgcccggcccc
ggcccccctccctccgggcagcgctcacctccctccgcctcagactgttttggtagcaac
ggcaacggcggcggcgcggcccggcccggctcccggcggctcctcggtttcggcgggcct
ccccgccccttcgtcgtcctccttctccccctcgctcgcccgggcgcccccccggccgcg
ccaaccagcgcctcctcgctcggcgcccgcgcgtccccgccgcgctccggcgtctcctcg
gcgcgcccggctcccggctgtccccgcccggcgtgcgggccggtgtatgggcccctcacc
atgtcgctgaagccccagcagcaacaacagcagcagcagcagcccacggccgccaatgcc
cgcaagcctggcggcagcggcggccttctcacgtcgcctgcagccgcgccgtcgccgacc
tcgtcctcagtctcgtcgtcctcagccgcggcttcctcctcctctacggtggcggcggct
agcgcaggcggcgggcggccgggcctgggcagaggtcgaaacagtagcaaaggactgcct
caatctacgatttcttttgatggaatctatgcaaatatgaggatggttcatatacttaca
tcagttgttggatccaagtgtgaagtacaagtgaaaaatggaggtatatatgaaggagtt
tttaaaacatacagccctaagtgtgatttggtacttgatgctgcacatgagaaaagtaca
gaatccagttcggggccaaaacgtgaagaaataatggagagtattttattcaagtgttca
gactttgttgtggtacagtttaaagatatggactccagttacgcacgaagagatgctttt
actgactctgctataagtgctaaagtgaatggtgaacacaaagagaaggacctggaaccc
tgggatgcaggtgaactcaccaccaatgaggaactggaggctttggaaaatgatgtttct
aatggatgggatcccaatgatatgtttcgatataatgaagaaaattatggtgtagtgtct
acatatgatagcagtttatcttcgtatacggtgcccttagaaagggataactcagaagaa
tttttaaaacgagaagcacgggcaaaccagttagcagaagaaattgaatcaagtgcccag
tataaagcccgggtggccctggaaaatgatgataggagtgaagaagaaaagtacactgca
gttcagagaaattccagtgaacgtgagggccacagcataaacactagggaaaataaatat
attcctcctggacaaagaaatagagaagtcatatcgtggggaagtgggcgacagaattca
ccgcgtatgggccagcctgggtcaggctccatgccgtcaagatccacctctcacacttca
gatttcaacccgaattctggttcagaccaaagagtagttaatggaggtgttccctggcca
tcgccttgcccatctccttcctctcgcccaccttctcgctaccagtcaggtcccaactct
cttccacctcgggcagccacccctacacggccgccctccaggcccccctcgcggccatcc
agacccccgtctcacccctctgctcatggttctccagctcctgtctctactatgcctaaa
cgcatgtcttcagaagggcctccaaggatgtccccaaaggcccaacgacaccctcgaaat
cacagagtttctgctgggcggggttccatttccagtggcctagaatttgtatcccatacc
tcaccaagtgaagcagctgctcctccagcagcaaggactagtcccgcagggggcacatgg
tcttcagtggtcagcggggttccaagattatcccctaaaactcacagacccaggtctccc
agacagaatagtattggaaatactcctagtgggccagttcttgcttctccccaagctggt
gttattccaactgatgctgtccctatgcctttaccagctgcatctcctacgcctgccagt
cctgcatccaacagagctgttaccccatccattgaggctaaagattccaggcttcaagat
cagaggcagaactctcctgcaggaaataaagaaaatatgaagtccaatgagacatcacct
agcttcccaaaagctgaaagtaaaggtatatcaccagttgtttctgaacatagaaaacag
attgatgatttaaagaaatttaagaatgattttaggttacagccaagttctgcttctgaa
tctgtggatcaactgctaaacaaaagtagagagggagaaaaatcaagagatgtgatcaaa
gacaaaattgaaccaaatgctaaggattctttcattgaaaatagcagcaactgcaccagt
ggcagcagcaagccgagcagccccagcatttccccttcaatcctcagtaacacggagcac
aagagaggacctgaggtcacatctcagggggttcaaacttccagtccagggtgtaaacaa
gagaaagatgataaagaggagacgaaagatgcagctgagcaagtgaggaaatcaacattg
aatcccaacgcgaaggagttcaaccctcgttccttttctcagccaaagccttctaccacc
ccaacctcacctcgtcctcaagcacaacctagcccatctatggtgggtcatcagcagcca
actccagtttatactcaacctgtttgttttgcaccaaatatgatgtatccagtcccagtg
agcccaggtgtgcaacctttatatcctatacctatgacgcccatgccagtgaatcaagcc
aagacatatagagcagtaccaaatataccccaacaacggcaagaccagcatcatcagagc
accatgatgcatccagcctcagcagcaggtccaccaattgttgccaccccaccagcttat
tccacacaatatgttgcctatagtcctcagcagtttccaaatcaacctcttgttcagcat
gtgccacattatcagtctcagcatcctcatgtctatagtcctgtaatacagggtaatgct
agaatgatggcaccaccaacacatgcccagcctggtttagtatcttcttcagcaactcag
tacggggctcatgagcagacacatgcgatgtatgcatgtcctaaattaccatacaacaag
gagacaagcccttctttctactttgccatttccactggctcccttgctcaacagtatgcg
caccctaatgctaccctgcacccacatactccacatcctcagccttcagctactcccact
ggacagcagcagaaccagcatggtggaagccatcctgcacccagtcctgttcagcaccat
cagcaccaggctgcccaggctctccatctggccagtccacaacagcagtcagccatttac
catgcagggctcgctccaaccccaccttccatgacacctgcctccaatacgcagtcgcca
cagaatagcttcccaacagcacaacagactgtcttcacgatccatccttctcatgttcag
ccggcatacaccaatccaccccacatggcccatgtacctcaggctcatgtacagtcagga
atggttccttctcatccaactgcccatgcgccaatgatgctaatgacgacacagccaccc
ggcggtccccaggccgccctcgctcaaagtgcactacagcccattccagtctcgacaaca
gcgcatttcccttatatgacgcacccttcagtacaagcccaccaccaacagcagttgtaa

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