Sus scrofa (pig): 100153708
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Entry
100153708 CDS
T01009
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X10
KO
K23625
ataxin 2/2L
Organism
ssc
Sus scrofa (pig)
Pathway
ssc05014
Amyotrophic lateral sclerosis
ssc05017
Spinocerebellar ataxia
ssc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100153708 (ATXN2)
05017 Spinocerebellar ataxia
100153708 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
100153708 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100153708 (ATXN2)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100153708 (ATXN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
100153708
NCBI-ProteinID:
XP_001929568
Ensembl:
ENSSSCG00000009834
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All DBs
Position
14:complement(32656537..32772082)
Genome browser
AA seq
1299 aa
AA seq
DB search
MRSAAAAPRGPAAAIEPRRFAAARWPGRRSLPRPARRGGRGGSGGAPRPYPSAAPPPPGP
GPPPSGQRSPPSASDCFGSNGNGGGAARPGSRRLLGFGGPPRPFVVLLLPLARPGAPPAA
PTSASSLGARASPPRSGVSSARPAPGCPRPACGPVYGPLTMSLKPQQQQQQQQQPTAANA
RKPGGSGGLLTSPAAAPSPTSSSVSSSSAAASSSSTVAAASAGGGRPGLGRGRNSSKGLP
QSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKST
ESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARRDAFTDSAISAKVNGEHKEKDLEP
WDAGELTTNEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEE
FLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNSSEREGHSINTRENKY
IPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWP
SPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPK
RMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHTSPSEAAAPPAARTSPAGGTW
SSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGVIPTDAVPMPLPAASPTPAS
PASNRAVTPSIEAKDSRLQDQRQNSPAGNKENMKSNETSPSFPKAESKGISPVVSEHRKQ
IDDLKKFKNDFRLQPSSASESVDQLLNKSREGEKSRDVIKDKIEPNAKDSFIENSSNCTS
GSSKPSSPSISPSILSNTEHKRGPEVTSQGVQTSSPGCKQEKDDKEETKDAAEQVRKSTL
NPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPV
SPGVQPLYPIPMTPMPVNQAKTYRAVPNIPQQRQDQHHQSTMMHPASAAGPPIVATPPAY
STQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQ
YGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPT
GQQQNQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSP
QNSFPTAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPP
GGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggcggccgcagctcctcggggccccgcagcggccatcgagcctcgtcgcttc
gccgcggccaggtggcccgggaggcgctcgctcccgcggccggcgcggcggggcgggcgg
ggcggcagcggcggggctccaagaccgtatccctccgccgcccctcccccgcccggcccc
ggcccccctccctccgggcagcgctcacctccctccgcctcagactgttttggtagcaac
ggcaacggcggcggcgcggcccggcccggctcccggcggctcctcggtttcggcgggcct
ccccgccccttcgtcgtcctccttctccccctcgctcgcccgggcgcccccccggccgcg
ccaaccagcgcctcctcgctcggcgcccgcgcgtccccgccgcgctccggcgtctcctcg
gcgcgcccggctcccggctgtccccgcccggcgtgcgggccggtgtatgggcccctcacc
atgtcgctgaagccccagcagcaacaacagcagcagcagcagcccacggccgccaatgcc
cgcaagcctggcggcagcggcggccttctcacgtcgcctgcagccgcgccgtcgccgacc
tcgtcctcagtctcgtcgtcctcagccgcggcttcctcctcctctacggtggcggcggct
agcgcaggcggcgggcggccgggcctgggcagaggtcgaaacagtagcaaaggactgcct
caatctacgatttcttttgatggaatctatgcaaatatgaggatggttcatatacttaca
tcagttgttggatccaagtgtgaagtacaagtgaaaaatggaggtatatatgaaggagtt
tttaaaacatacagccctaagtgtgatttggtacttgatgctgcacatgagaaaagtaca
gaatccagttcggggccaaaacgtgaagaaataatggagagtattttattcaagtgttca
gactttgttgtggtacagtttaaagatatggactccagttacgcacgaagagatgctttt
actgactctgctataagtgctaaagtgaatggtgaacacaaagagaaggacctggaaccc
tgggatgcaggtgaactcaccaccaatgaggaactggaggctttggaaaatgatgtttct
aatggatgggatcccaatgatatgtttcgatataatgaagaaaattatggtgtagtgtct
acatatgatagcagtttatcttcgtatacggtgcccttagaaagggataactcagaagaa
tttttaaaacgagaagcacgggcaaaccagttagcagaagaaattgaatcaagtgcccag
tataaagcccgggtggccctggaaaatgatgataggagtgaagaagaaaagtacactgca
gttcagagaaattccagtgaacgtgagggccacagcataaacactagggaaaataaatat
attcctcctggacaaagaaatagagaagtcatatcgtggggaagtgggcgacagaattca
ccgcgtatgggccagcctgggtcaggctccatgccgtcaagatccacctctcacacttca
gatttcaacccgaattctggttcagaccaaagagtagttaatggaggtgttccctggcca
tcgccttgcccatctccttcctctcgcccaccttctcgctaccagtcaggtcccaactct
cttccacctcgggcagccacccctacacggccgccctccaggcccccctcgcggccatcc
agacccccgtctcacccctctgctcatggttctccagctcctgtctctactatgcctaaa
cgcatgtcttcagaagggcctccaaggatgtccccaaaggcccaacgacaccctcgaaat
cacagagtttctgctgggcggggttccatttccagtggcctagaatttgtatcccatacc
tcaccaagtgaagcagctgctcctccagcagcaaggactagtcccgcagggggcacatgg
tcttcagtggtcagcggggttccaagattatcccctaaaactcacagacccaggtctccc
agacagaatagtattggaaatactcctagtgggccagttcttgcttctccccaagctggt
gttattccaactgatgctgtccctatgcctttaccagctgcatctcctacgcctgccagt
cctgcatccaacagagctgttaccccatccattgaggctaaagattccaggcttcaagat
cagaggcagaactctcctgcaggaaataaagaaaatatgaagtccaatgagacatcacct
agcttcccaaaagctgaaagtaaaggtatatcaccagttgtttctgaacatagaaaacag
attgatgatttaaagaaatttaagaatgattttaggttacagccaagttctgcttctgaa
tctgtggatcaactgctaaacaaaagtagagagggagaaaaatcaagagatgtgatcaaa
gacaaaattgaaccaaatgctaaggattctttcattgaaaatagcagcaactgcaccagt
ggcagcagcaagccgagcagccccagcatttccccttcaatcctcagtaacacggagcac
aagagaggacctgaggtcacatctcagggggttcaaacttccagtccagggtgtaaacaa
gagaaagatgataaagaggagacgaaagatgcagctgagcaagtgaggaaatcaacattg
aatcccaacgcgaaggagttcaaccctcgttccttttctcagccaaagccttctaccacc
ccaacctcacctcgtcctcaagcacaacctagcccatctatggtgggtcatcagcagcca
actccagtttatactcaacctgtttgttttgcaccaaatatgatgtatccagtcccagtg
agcccaggtgtgcaacctttatatcctatacctatgacgcccatgccagtgaatcaagcc
aagacatatagagcagtaccaaatataccccaacaacggcaagaccagcatcatcagagc
accatgatgcatccagcctcagcagcaggtccaccaattgttgccaccccaccagcttat
tccacacaatatgttgcctatagtcctcagcagtttccaaatcaacctcttgttcagcat
gtgccacattatcagtctcagcatcctcatgtctatagtcctgtaatacagggtaatgct
agaatgatggcaccaccaacacatgcccagcctggtttagtatcttcttcagcaactcag
tacggggctcatgagcagacacatgcgatgtatgcatgtcctaaattaccatacaacaag
gagacaagcccttctttctactttgccatttccactggctcccttgctcaacagtatgcg
caccctaatgctaccctgcacccacatactccacatcctcagccttcagctactcccact
ggacagcagcagaaccagcatggtggaagccatcctgcacccagtcctgttcagcaccat
cagcaccaggctgcccaggctctccatctggccagtccacaacagcagtcagccatttac
catgcagggctcgctccaaccccaccttccatgacacctgcctccaatacgcagtcgcca
cagaatagcttcccaacagcacaacagactgtcttcacgatccatccttctcatgttcag
ccggcatacaccaatccaccccacatggcccatgtacctcaggctcatgtacagtcagga
atggttccttctcatccaactgcccatgcgccaatgatgctaatgacgacacagccaccc
ggcggtccccaggccgccctcgctcaaagtgcactacagcccattccagtctcgacaaca
gcgcatttcccttatatgacgcacccttcagtacaagcccaccaccaacagcagttgtaa
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integrated database retrieval system