Sus scrofa (pig): 100153747
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Entry
100153747 CDS
T01009
Symbol
VPS13A
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100153747 (VPS13A)
Membrane trafficking [BR:
ssc04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
100153747 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Spo16_N
Mer2
Motif
Other DBs
NCBI-GeneID:
100153747
NCBI-ProteinID:
XP_020920767
LinkDB
All DBs
Position
1:230069339..230331343
Genome browser
AA seq
3172 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLTLGIWGGDVALKNLEIKENALSQLDVPFKIKVG
HIGNLNLKIPWKNLYTQPVEAVLEDIYLLIVPSSRIKYDPLKEAKQLLEAKRQELKRIEE
AKQKVADQEKHRVEKQDTFTEKLITQIIKNLQVKISNIHIRYEDDITNRETPLSFGISLQ
NLSMQTTDQYWVPCLHDETEKLFCKLIRLDNLFAYWNVKSQMFYLNDYNESLDSLRNGIV
DENIVPEGYDFVFRPISANGKLQMNRRSDFDFSAPKINLDVELHDIAIEFNKSQYFSLME
LLESVDMMTQNLPYRKFKPDVPLHYHAKEWWVYAIRGILEVDVWPRLRMWSWKYIREHRQ
KVKQYKELYKKKLTSKKPSGELLNSLEELEKALDVFNITIARQQAEVEVKKAGYRIYREG
AKESEENKGWFSWLWTWSESHKQQPDVKPGSLEEMLTPEEKTLLYEAIGYSETAVDPTLP
KTFEAMKFFVHLKSMSIILREKQQSXELLDIVVEEFSTLIVQRPGAQAIKFETKIDSFHV
TGLSDNSTKPRLLSSLDDAASLFQIIFEINPLDETVAQRCIIEAEPLEMLYDAKTVNSIV
EFFRPPEEVNLAQLTSVTLTKLEEFREKTATGLLYIIETQKVLDLKINLKSSYIIIPQNG
IFSPTSNLLLLDLGHLKVTSKIRSELPDLKQGGAKLEEIMQRAYDSFDIQLTSIQLLYSR
VGDNWKEARKLNVSTQHILVPMHFNVELSKAMVFMDIRMPRFKIFGNLPLVSLQISDKKL
QGILELIESIPKPPPATEVHVPVKQSQIQRSTSLGTSQLSQKRIPVLEIPCVEDDSDDEE
FFDAPCSPLEEPVQFPASVKYPQQKKLQKLDYSKNMIEYKIRFEVPEVFIQFCHPVGDCE
VPVVEIDVLGLGTDIEFRTFDLKANAFLKEVCLKCPEYFDANQKPVYLITTLDNTMEDLL
TLEYVKAEKNLPDLKSTYNNVMQLIKVNFSSLDIHLHTEALLNTINYFNNILPHLEEKSA
PVHVAETEDKGEVIRKIPLKLSKNEDVITLQILAELSCLQIFIQDQKRNISEIKIEGLDS
EMIMRPSVTEINAKLRNIVVLDSDITAVYKKAVYITGKEVFSFKMVSYMGATAGSAYTNM
NVFDSQVNLTVGCIEVVFVTKFLYSMLAFIDNFQAGKQALAEATVQAAEMAATGVKELAQ
RSSRMALDVNIKAPVVVIPQSSISENVFVADFGLITMTNTFHVITESQTNPPPIIDLITI
KLSEMRLYRSQFINEAYQEVLDLLLPLNLEVIVERNLSWEWYQEVPCFNVNAQLKPMEFI
LSQEDITTAFKTLYGNIRYEEGDSASGGGIKDQTSVTSRTTNASHPSGGTTIVTAAVVEV
HSHAAQVKTTLNMSFRTDYLTMVLYSPDPKQTFFTGIRDPSLKLAEFKLENIISTLKMCT
DDSVSSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDIRYRKVRDGWVSDLVLQ
EMYICASVEFLLTVANVFLEAYTTGTAVDTSVQTWPAKEEVPIQQSEKWEVNILIKNPEI
VFVADMTRNDAPALVITTQCEICWKGDHENNRMTAAIKDLQVRACPFLPVKRKGRITTVL
QPCDLFYQATQISTDPKVIDLSVKSLTLKVSPVIINTVITITSALYTAKETVPQETASST
AQLWEKKDTKNLKMWFLEEPNEVEKIAPTTELVPNGEMIKMNIDSIFIVLEAGIGHRTVP
MLLAKSRFSGEGKNWSSLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLG
IKMKKKAKKAIVESDTEEENYKVPEYKTVITFHSKDQLNITLSKCGLVMLNNLVKAFTEA
ATLSSSGIIRDLAPFIILNSLGLNISVTPSESFSVLNVPMAKSYVLKSEESLSMDYVRTK
DNDHFNAMTSLSSKLFFILLTPANHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDA
VEGSKKVTIRSPVQIRNHFSIPLRVYGGDTLLGTASPGNEFNIPLASYRSLLSLKPEDED
YEMCEGIDFEEIIKTDGTFLKKKCRPINPSRKPFIINVVPEKDNLTSMSVYSEDGWDLPY
IMHLWPPILLRNLLPYKIAYYIEGIEHRVFTLNEGRSAQICTIQSDKAKLHLKLLDYLNH
DWKSEYHIKPNQQDISFISFTCVTEIEKTDLDIAIHVTYNTGQTVVAFHSPYWMVNKTGR
MLQYKADGIHRKHPPNYKKPVLFSFQPKHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAV
KCKGLKMEYQVGVTIDLSSFNITRIVTFTPFFLIENKSKYRVSVAEEGSDKWFSLDLEQC
IPFWPEDASNTLLIQVERSEGPPKKIHFNKQESCILLRLDNELGGIIAGVNLAEHSTVIT
FSDYHDGAATFLLINHTKNDIVHYKQSSLSETEDSLPPGKAVYYTWADPVGSRKLKWKCG
KSHGEVTHKDDMMTPINMGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAEQE
VVLALQDVGISLVNNYTKQEVAYIGITSSDVVWEIKPKKKARWKPMSIKQTEKLEKEFKE
YTESSPSEDRVVDLDSNTMVRFTPSGTNMKILQAHEIAIRRNYLPALKVEYSTSAHQSSF
RIQIYRIQIQNQIHGAVFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKY
FKVLIQEMDLRLDLGFVYAIAELMTAAEVTEKAEVELFHKDIEAFQEEYKIVSLVDSSQV
SLYEYFHISPIKLHLSVSLSSGREEAKDSEQHEGMMAVHSLNLLLKSIGATLTDVQDVVF
KLAFFELNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAF
FYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQ
KRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLV
GAVTRPTGGIIDMASSTFQGIKRATETSDEVESLRPPRFFNEDGVIRPYRLRDGTGNQML
QVMEDGRFAKYKYFTHVMINKTDMLMITKSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFI
VHGRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILRKLEEAREPSPNL
NT seq
9519 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtcgtggacgtgttgaaccggttcttgggggactatgtggtg
aacctggacacatcccaactcactctgggcatctggggaggagacgtggccttgaagaat
ctcgaaattaaagaaaatgccttgagtcaactggatgtaccatttaaaattaaagttggc
catataggtaatcttaatcttaaaattccatggaaaaacctttatactcaaccagttgaa
gctgtattagaagacatttatttactcatagtgccttcttctagaataaaatatgatcct
ttaaaagaagcaaaacaactcttggaagcaaagcgacaggaactgaaaagaatagaagaa
gcaaaacaaaaagtagctgatcaagaaaaacatcgggtggagaagcaggatacttttaca
gaaaaattaattactcagatcataaaaaatcttcaagtgaaaatttccaacatccatatt
cgttatgaagatgatatcacaaatcgagagaccccactgtcatttggtatttcccttcaa
aatctcagcatgcagacaactgatcaatactgggttccatgtttacatgatgaaactgag
aaactattttgtaagttaattcgattggataacctttttgcctattggaatgtgaagtct
cagatgttttatcttaatgattataatgaatcattggacagcctgaggaatggcatcgtt
gatgaaaacattgttccagaaggttatgattttgtatttcgccctatatctgctaatggc
aaacttcagatgaatcgacgatcagattttgacttctctgctccgaaaataaatctggat
gttgagttacatgacatagcaattgaatttaataaatcacagtatttcagtcttatggag
cttctcgaatcagttgatatgatgacgcaaaatctaccatataggaaattcaaaccagat
gtacctcttcattaccatgccaaagaatggtgggtttatgctatacgtggtattctcgaa
gtagatgtttggccccgcttacggatgtggtcatggaagtatattagagaacataggcaa
aaagtgaagcaatataaagaattgtataaaaaaaagctaacaagtaagaagccatctggt
gaacttctcaactctttggaggagctggaaaaggctttggatgtgtttaatataactata
gcaagacaacaggcagaagttgaggtaaagaaagctggatataggatttacagagaagga
gcaaaagagtcagaggagaataaaggatggtttagctggctatggacttggtcagaatcg
cataaacaacaaccagatgttaaacctggaagtcttgaagaaatgctgacgcctgaagaa
aaaactttattatatgaagcaattggctatagtgaaacggcagttgatccaaccttgcca
aaaacatttgaagccatgaagttttttgttcacttgaaaagtatgtctattattctaaga
gaaaaacaacaaagtnctgagctgttagatattgtagtggaagaatttagcactttgatt
gtgcaaagaccaggagcacaagcaattaaatttgaaaccaaaatagattcatttcacgtt
actggcttatcagataattcaacaaaaccccgcctcctttcttcactggatgatgctgca
tcactcttccaaattatatttgagataaatcctttagatgaaactgttgctcaaaggtgt
atcatagaagctgaacctttagaaatgctgtatgatgcaaaaacagtgaatagtatagtg
gaattcttcagacctccagaggaggtaaatctagcacagctgacctcagtgactttgaca
aaacttgaagaatttcgtgagaagacagcaacaggtctgctttatattattgaaacacag
aaagttcttgatcttaaaattaatttgaagtcttcatatattattatcccacaaaatgga
atttttagccctacatcaaatcttctacttttggatcttggtcatctaaaggtgacaagt
aagattcgttcagaattaccagatttaaagcaaggtggggccaaacttgaggagataatg
caaagagcctatgattcctttgatattcagcttacaagcatacagctgctttacagcaga
gttggtgataattggaaagaagcacgaaaactcaatgtatctacacagcatattttggta
cctatgcacttcaatgtggaactctctaaggccatggttttcatggatataaggatgccc
agattcaagatttttggaaacttaccactggtttctttacaaatatcagataaaaaactg
caagggattttggaactgattgaaagcatacctaaacctccacctgcaactgaagtacat
gtccctgtcaaacaatctcagattcaaagatccacatctttgggaacatcacagctctca
cagaaaagaattcctgtcttggaaattccatgtgttgaagatgattcagatgatgaggag
ttttttgatgcaccatgtagtcccttggaagagcctgttcagtttccagctagcgttaaa
tatcctcaacagaaaaaacttcaaaagctggattattcaaaaaatatgattgagtataaa
ataagatttgaagtgccagaggtttttattcagttttgtcaccctgttggagattgtgaa
gtacctgtggtagaaattgatgtcttaggattgggcacagacattgagtttagaacattt
gatttgaaagcaaatgcctttttgaaagaggtctgcttaaaatgcccagaatatttcgat
gcgaaccagaaaccagtttatttaattaccacactggataacacaatggaagatttatta
acactggaatatgtgaaggctgaaaagaatttacctgacttgaaaagtacctataataat
gttatgcaactgattaaggtgaatttttcctccttggatattcatttacatactgaagca
ttgctgaatacaataaattattttaataatatccttccacatttggaggaaaaatcagcg
ccagtgcatgttgcagagactgaagacaaaggagaggttattagaaaaatacctttaaaa
ctatctaagaatgaagatgttattaccttgcagattttagcagaattatcatgtttacag
atttttattcaagatcagaaacgtaacatttcagaaattaagattgaagggcttgattct
gagatgattatgaggccttcagtgactgaaataaatgcaaagctgagaaatatagttgtt
ctggattctgatataacagctgtatacaaaaaggctgtttatattactggaaaagaagtt
ttcagcttcaaaatggtttcttacatgggtgcaactgctggttctgcatacaccaatatg
aatgtgtttgacagtcaagttaatttaactgttggttgcattgaagtggtttttgtcaca
aaatttctatattctatgttggcttttatagataattttcaagcaggtaaacaagccttg
gctgaggcaactgttcaggcagcagaaatggctgctactggtgtaaaagaactggcacaa
aggagttctagaatggcattggatgttaacatcaaagccccagttgtggttataccgcag
tcttccatttctgaaaatgtttttgttgctgattttggactcattacaatgacaaataca
ttccatgtgataacagagagtcagaccaacccaccacccatcattgatttgataacaata
aagctgagtgaaatgcgactgtataggtctcaatttattaatgaagcctaccaggaagta
ctggatctactactgccattaaatcttgaggtgattgttgaacgaaacttatcctgggag
tggtaccaggaagttccttgttttaatgtaaatgctcagctaaagcccatggagttcatt
cttagtcaagaagacataacaactgcttttaaaacattatatggcaacatacggtatgaa
gaaggtgatagtgcctcaggtggaggaataaaagatcagactagtgttactagcagaact
actaatgcttcacacccttcaggaggaacaactatagtgacagctgctgtggtagaagta
cattcacatgctgctcaagttaagacaacactaaatatgagtttccgaactgattatctc
accatggttctgtatagtccagatcctaaacagactttctttacaggtattcgtgatcct
tctctgaaacttgctgaatttaagttggagaatatcataagtactttaaaaatgtgtaca
gatgactcagtatcatcttccttctcattaaaaaactgtattttagatgacaaaagacct
catgtcaagaaagcaactcctagaatgataggactgacagttggatttgacaaaaaggac
atgatggacataagatataggaaagtcagagacggttgggtatctgatttagtccttcaa
gaaatgtatatttgtgcaagtgtggaatttctcctaacagttgcaaatgtctttcttgag
gcctacaccacaggcactgctgtagataccagtgttcaaacatggcctgctaaagaagaa
gtacctatacagcaatcagagaagtgggaagttaatattcttattaaaaatccagaaatt
gtatttgtggctgatatgacaagaaatgatgctcctgccttagtcattacaacacaatgt
gaaatttgttggaaaggtgaccatgaaaataatagaatgactgctgccattaaagatctc
caagtgagagcatgcccatttcttccagtcaagagaaaaggaaggatcactactgttttg
cagccctgtgacttgttctatcaagccactcagataagtacagatccaaaagtgattgat
ttatcagtaaaatccctgacactgaaggtttcaccagttatcataaatactgtgattacc
ataacttcagcactttacacagctaaggaaaccgtcccacaagaaactgcttcttctaca
gcacaattatgggaaaaaaaagatacaaaaaatttaaaaatgtggtttcttgaagaacca
aatgaagttgaaaaaatagctcccacaactgaattggtgcccaatggagagatgataaaa
atgaatattgattctatttttatagttcttgaggctggaattggacatagaacagtgcct
atgcttttggcaaaatcacgtttctcaggggaaggcaaaaactggagttctctgataaat
ctgcactgtcagcttgagctagaagtacattattacaatgaaatgtttggtgtatgggag
cctttgcttgaacccttagaaattgatcagactgaagattttagaccatggaatcttgga
atcaagatgaaaaagaaagccaaaaaggccattgttgagtcagatactgaagaagaaaat
tacaaagtgccagaatataaaactgtcatcactttccattcaaaagaccaactgaacatt
acattatccaaatgtggccttgtaatgttaaataatttagtcaaggcatttacagaagct
gccacattatcttcatctggcatcataagggatctagcaccatttataattttaaattct
cttggactcaatatctctgttacaccaagtgaatcttttagcgtactcaacgtacctatg
gcaaaatcatatgtattgaaaagtgaggagagtttaagtatggattacgtccgaactaaa
gataatgatcatttcaatgcaatgaccagcctaagcagcaaactcttcttcattcttctt
acacctgctaaccactctgctgctgataaaatccctttaacaaaagttggacgacgactc
tatactgtacgacacagagagtctggagttgaaagatctattgtttgtcaaattgatgca
gtggaaggaagtaagaaggtaaccattcgctccccagtgcagattagaaatcatttttca
ataccacttcgtgtttatggaggggacaccttattgggaacagcttctcctggaaatgaa
tttaacattccattagcatcttaccgatcactcctttctctgaagccagaagatgaggac
tatgaaatgtgtgaaggaattgactttgaagaaattataaaaactgatggcacttttcta
aagaagaaatgtagacctataaacccttccaggaagccatttatcattaatgtggtgcca
gaaaaagataatttgacatctatgtcagtgtattcagaagatggttgggacttaccatac
ataatgcatttgtggccacctattctgctccgaaatcttcttccttacaaaattgcttat
tatatagaggggattgaacatagagtttttactctaaatgaaggccgttcagcccagatt
tgtactatacagtcggataaagccaagctacatttgaaattacttgactatcttaatcat
gattggaaaagtgaatatcatataaaacctaatcaacaggatattagtttcatcagtttt
acttgtgttaccgaaatagaaaagactgatttagatattgctatccatgtgacttataat
actggccagacagttgtggcatttcatagtccttattggatggttaataaaactggtcga
atgttacagtataaagcagatggaattcatcgaaagcatccacctaattataaaaagcca
gttctcttttcttttcagccaaagcacttttttaataacaataaggttcagcttatggta
actgatagtgaattgtcagatcagttttcaattgatactgttggtagtcatggagctgtt
aaatgtaaaggcctgaaaatggagtatcaagttggtgtcactatagaccttagcagtttt
aatattaccagaattgtcacatttacccccttttttttgattgaaaacaaaagcaaatat
cgtgtatcagtggctgaagagggaagtgataaatggttctctcttgatttggagcagtgt
atccccttttggcctgaggatgcttctaatacacttcttattcaagttgaaagaagtgag
ggccctcccaagaagatacattttaacaagcaagaaagttgtattttattgcgtctggat
aatgagcttggaggtattatagcaggagttaatttggctgagcattctacagttattaca
ttttcagattatcatgatggagcagctacattcctgttaataaatcacaccaagaatgac
attgttcactacaagcaaagttccctcagtgaaacagaagattccctccctcctggaaaa
gcagtgtattatacatgggctgaccctgtgggctctagaaagctgaagtggaaatgtgga
aaaagccacggtgaagtaacacataaggatgatatgatgacacctataaatatggggaaa
aagaccatttatctagtttcattctttgaaggcttacagcgcattattttattcactgaa
gatccaagggtatttaaagtgacatatgaaagtgagaaagcagagttagcagagcaagaa
gttgttttggcattgcaagatgttggaatttctctcgtcaacaactatacaaagcaagaa
gtagcctatattggcattacaagttctgatgtggtttgggagataaagcccaagaagaag
gcaagatggaagccaatgagtataaagcaaactgagaagttggagaaagaatttaaggaa
tatactgaatcttcaccatctgaagatagagttgttgatttggacagtaatacgatggtt
cgcttcacacctagtggtactaacatgaaaattctgcaggcacatgaaatcgctatacga
agaaattatcttccagcgttaaaagtagaatatagcacatctgcacatcaatcatcattt
agaattcaaatttacagaattcagattcaaaaccagatacatggtgctgtatttccattt
gtgttttatcccattaaacctcctaagtcggtcaccatggattcagcaccaaagcccttc
acagatgtcagtattgtcatgagatctgcagggcattcccagatatcacgtattaagtat
ttcaaagtgttgatccaagaaatggatctcaggttagatcttgggtttgtttatgctata
gcagaacttatgacagcagcagaagtgactgaaaaagcagaggttgagctttttcataaa
gatatagaagcgttccaagaagaatacaaaatagtttcattagtagattcatcacaagtc
agtctctatgaatactttcatatatctcctatcaagttgcatttaagtgtttcattgagt
tcgggtagagaagaagctaaagattcagaacaacatgaaggaatgatggcagttcattct
ttaaatcttttgctgaagagtattggcgccactcttacagatgtacaagacgtcgttttt
aagcttgcattttttgaactcaactatcagtttcatacaacatctgaactacagtctgaa
gtaataagacactattcaaaacaggccattaagcagatgtatgtactcatccttggactt
gatgttttgggaaatccctttggcttgattagagaattttctgaaggtgtagaagccttt
ttttatgaaccttaccagggagccatccagggccctgaagagtttgtggaaggcatggct
ctaggactgaaagcactagttggtggagctgttggcggattagctggtgctgcctccaaa
atcaccagcgctatggctaaaggtgtagcagctatgactatggatgaagactaccaacag
aagagaagagaagccatgaacaagcaaccagctggtcttagagaaggcatcactcgtgga
ggaaaaggcttagtttctggttttgtaagtggcataacaggaattgttacaaaaccaatc
aaaggagctcaaaaagaaggagcagctggtttctttaaaggtgttgggaaaggtttagtt
ggagcagtgacaaggccaactggaggcattatcgacatggctagtagtacatttcaggga
ataaaaagagctacagagacttctgatgaagtggagagtctgcgaccccctaggtttttt
aatgaagatggagttatcagaccttacaggttgagagatggtactggaaatcaaatgtta
caggtcatggaagatggaagatttgcaaaatacaaatactttacccatgtcatgatcaat
aaaacagatatgctaatgataaccaaaagtggcgtgttgtttgtaacaaaaggaacattt
ggacagcttacgtgtgaatggcagtatagttttgacgagtttaccaaagagccattcatt
gttcatgggagaaggttgcgcattgaagcaaaggaacgggtgaagtctgtattccatgcc
aaagagtttggaaaaataattaacttcaagaccccagaggatgctaggtggatcctcaga
aagctagaagaagcaagagaaccctccccaaacctctga
DBGET
integrated database retrieval system
