Sus scrofa (pig): 100153928
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Entry
100153928 CDS
T01009
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
100153928 (PRPF39)
Spliceosome [BR:
ssc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100153928 (PRPF39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_16
TPR_MalT
TPR_12
Motif
Other DBs
NCBI-GeneID:
100153928
NCBI-ProteinID:
XP_001927155
Ensembl:
ENSSSCG00000004997
UniProt:
F1SI15
A0A8D1N0I9
LinkDB
All DBs
Position
1:175285219..175317245
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AA seq
666 aa
AA seq
DB search
MQNSHMDEYRNSNNGSTGNSSEVVIEQSADFSTEIMNVTEMEQSPDGSPTVTTTTEENET
ANTVDLPVTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFF
IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP
ETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSH
HFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKL
ITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF
EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPM
VHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAI
KNAKANNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDL
KQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQD
SLKRKAENGSEEPEEKKAHTEDTSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNYGQY
YPPPPT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattctcacatggatgagtacagaaattctaataatggcagcacaggcaacagt
tcagaggtagtgatagaacagtctgctgatttcagtactgaaattatgaacgttacggaa
atggaacagtcacctgatggatctcctacagtgactacaactacagaagaaaatgaaacg
gcaaatactgtggaccttcctgtgacagaaacagaagcaaatttccctccagaatatgaa
aagttttggaaaactgtagaaaataatcctcaggattttacaggctgggtatatttgctt
cagtatgtagaacaggagaatcacttgatggctgccaggaaagcgtttgacaaatttttc
atacactatccgtattgctatggttattggaaaaagtatgcagaccttgaaaagcggcat
gacaacattaaacaatcagatgaggtgtatcgccgggggcttcaggcaatacctcttagt
gttgacctttggatacattatataaacttcttaaaagaaaccctggacccaggtgatcct
gaaacaaccagtacaataaaaggaacttttgagcatgctgttctagctgcaggaacagat
ttccgatctgacagactatgggaaatgtatataaactgggaaaatgaacagggaaacctg
agagaagttacagctatatatgatcgtattcttggtattccaacacagctttatagtcat
cattttcagagatttaaagaacatgtacaaaataacttgcctagagatcttctaactggt
gaacagtttattcagctgcgaagggaattagcttctgtaaatggccatagtggtgatgat
ggtcctcccggtgatgatctaccatcaggaattgaagacataactgatccagcaaagctg
attactgaaatagaaaacatgagacatagaatcattgaaattcatcaagaaatgtttaat
tataatgaacatgaagttagtaagaggtggacatttgaagaaggtattaaaagaccttat
tttcatgtgaaaccattggaaaaggcacaactgaaaaactggaaagaatacttagaattt
gaaatcgaaaatgggactcatgaacgagttgtggttctatttgaaagatgtgtcatatca
tgtgccctctatgaggagttttggattaagtatgccaagtacatggaaaaccatagcatt
gaaggagtgaggcatgtcttcagcagagcttgcacaattcatctcccaaagaaacctatg
gtgcatatgctttgggcagcttttgaggaacagcagggcaatattaatgaagccaggaat
atcttgagaacatttgaagaatgtgtcctaggactggcaatggttcgtttgagaagagta
agtttagaacgacggcatggaaatatggaagaagctgaacgtctgcttcaggatgccatt
aagaatgccaaagcaaataatgaatcatcattttatgctatcaaacttgcccgacatctt
ttcaaaatacaaaaaaaccttcccaaatcaagaaaggtgcttttggaagcaattgaaaga
gacaaagagaacacaaagttatacctcaatttacttgaaatggaatacagtggtgacctc
aaacaaaatgaagaaaatatcctaaattgttttgacaaagctatacatggttcattacct
attaaaatgagaattacattttctcagagaaaagtggaatttcttgaagattttggctca
gatgttaataaacttctgaatgcttatgatgaacatcagacactcctaaaagaacaagat
tctttaaaaaggaaagcagaaaatgggtcagaagaaccagaggaaaagaaagcacacaca
gaagatacttcatcatctacacagatgattgatggtgatttacaggcaaatcaagctgct
tataattatagtgcctggtatcaatacaattatcagaatccttggaattatggacagtat
tatcctcctcctccaacctga
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