Sus scrofa (pig): 100154735
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Entry
100154735 CDS
T01009
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03082
ATP-dependent chromatin remodeling
ssc03250
Viral life cycle - HIV-1
ssc04714
Thermogenesis
ssc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100154735 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100154735 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100154735 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100154735 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssc01009
]
100154735 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100154735 (SMARCB1)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100154735 (SMARCB1)
Protein phosphatases and associated proteins [BR:
ssc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100154735 (SMARCB1)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100154735 (SMARCB1)
SWI/SNF complex
100154735 (SMARCB1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100154735 (SMARCB1)
PBAF complex
100154735 (SMARCB1)
SWI/SNF complex
100154735 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
100154735
NCBI-ProteinID:
XP_001929472
Ensembl:
ENSSSCG00000010070
UniProt:
F2Z4X9
A0A4X1V165
LinkDB
All DBs
Position
14:complement(49874981..49906043)
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagactttcgggcagaagcccgtcaagttccagttggag
gacgacggcgaattctacatgatcggctctgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tacacaaccctggccaccagcgtgactctgttaaaagcctccgaggtggaagagatcctg
gacggcaacgatgagaagtacaaggccgtgtctatcagcaccgagcccccaacctacctc
agggaacagaaagccaagaggaacagccagtgggtgcccaccctgcccaacagctcccac
cacctggatgccgtgccctgctccacgaccatcaacaggaaccgcatgggccgggacaag
aagaggacattcccactctgctttgacgaccatgacccagctgtgatccatgagaatgca
tcccagcccgaggtgctggtccccatccggctggacatggagatcgacgggcagaagcta
cgggatgccttcacttggaacatgaatgagaagctgatgacccctgagatgttttcagaa
attctctgtgatgacctggatttgaacccgctgacatttgtaccagccatcgcctctgcc
atcagacagcaaattgagtcctaccccacagacagcatcctggaggaccagtcagaccag
cgggtcattatcaagctgaacatccatgtgggaaacatctcgctggtggaccagttcgag
tgggacatgtcagagaaggagaactcgccagagaagtttgcactgaagctgtgctctgag
ctggggctgggcggggagttcgtcaccaccattgcatacagcattcggggacagctgagc
tggcaccagaagacctatgccttcagtgagaaccccctgcccacggtggagattgccatc
cggaacacaggcgatgctgaccagtggtgcccgctgctggagaccctgacagatgccgag
atggaaaagaagatccgcgaccaggacaggaacacaaggcggatgaggcgtctggccaat
actgctccggcctggtaa
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integrated database retrieval system
