Sus scrofa (pig): 100155319
Help
Entry
100155319 CDS
T01009
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04518
Integrin signaling
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
ssc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100155319 (COL9A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100155319 (COL9A1)
04518 Integrin signaling
100155319 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100155319 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100155319 (COL9A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100155319 (COL9A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100155319 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssc00535
]
100155319 (COL9A1)
Proteoglycans [BR:
ssc00535
]
Extracellular matrix (ECM) proteoglycans
Others
100155319 (COL9A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
DUF4882
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
100155319
NCBI-ProteinID:
XP_003121321
Ensembl:
ENSSSCG00000004274
UniProt:
A0A8D0XSJ2
A0A5G2QD63
LinkDB
All DBs
Position
1:complement(50403355..50498356)
Genome browser
AA seq
922 aa
AA seq
DB search
MTSFWKIPVFFFVCSFLGSWGSTTVKRRPRFPVNSNSNGENELCPKVRIGQDDLPGFDLI
SQFQIDKAASRRAIQRVVGSTALQVAYKLGKNVDFRIPTRQLYPSGLPEEYSFLTTFRMT
GSTLEKNWSIWQIQDSSGKEQVGVKINGQTKSVAFSYKGLDGSLQTAAFSNLPSLFDSQW
HKIMIGVERNSATLFVDCNRIESLPIKPRGQIDVDGFAVLGKLVDNPQVSVPFELQWMLI
HCDPLRPSRETCHELPARITPSQTIDQRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPPGEPGKPGVPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGAPGPRGFPGRGIP
GPPGPPGGAGLPGELGRVGPIGDPGRRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEVGEPGRQGHKGEEGDQGEPGEVGAQGPPGAQGLRGITGIAGAK
GEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEIGPKGDRGAQGSRGIPGLPGPKGDTGLP
GVDGREGIPGMPGTKGEPGKPGPPGEAGLQGLPGIPGIPGAKGVAGEKGNTGAPGKPGQL
GNSGKPGQQGPPGEVGPRGPRGLPGSRGEIGPVGPPGPPGKLGSLGSPGLPGLPGPPGLP
GMKGDRGVVGEPGPKGEQGVSGEEGEAGERGELGDIGLPGPKGSVGNPGEPGLRGPEGSR
GLPGVEGPRGPPGPRGVQGEQGATGLPGIEGPPGRAPTDQHIKQVCMRVMQEHFAAMAAS
LKRPESGASGLPGRPGPPGPPGPPGENGFPGQMGLRGLPGMKGPPGALGLRGPKGDMGER
GDRGPPGRGPKGLPGATGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGPPGF
CEPASCTMQAGQRAFNSKGPDQ
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcttctggaaaattccagttttcttcttcgtatgcagtttcctgggatcctgg
ggatccacgactgtcaagcgtcgcccaaggtttcctgtcaattcaaattctaatggtgaa
aatgaactctgtccaaaagtcaggattggacaagacgatttaccagggtttgacttgatt
tctcagttccagatagacaaagcagcatccagaagagctatccagagagtagtgggatca
actgcattgcaagtggcttataaattgggaaaaaatgtagacttcagaattccaactagg
caattgtatcccagtgggctgcctgaagaatactcctttctaaccacttttcggatgact
ggaagcacacttgaaaagaactggagcatttggcagattcaggattcctcagggaaggag
caagttggcgtgaagataaatggccaaacaaaatcagttgcattttcatacaaagggctg
gacgggagtctccaaactgcggccttttcgaatttgccctccttgtttgattcccagtgg
cataagatcatgattggtgtggaaaggaacagcgcaactctttttgttgactgcaacagg
attgagtccttacctataaagccaagaggccaaattgatgttgatggctttgctgtgctc
ggaaaacttgtggacaatcctcaagtttctgttccgtttgaacttcagtggatgctgatt
cattgtgacccactgcgacccagcagagaaacttgccatgagttgccagccaggattaca
cccagccagaccatcgaccagaggggccccccaggtgagcagggtcctcctgggccaccg
ggccctcctggagtccctggcatcgacggtattgacggtgaccgaggtccgaagggtccc
ccaggccccccgggtcccccaggagaaccgggaaagccaggagttcccggcaagcctggc
acgccgggcgccgacggattaacaggacctgatggatcccctggctctgttggaccaaga
ggacaaaaaggagaacctggtgcaccgggacctcgtggattcccaggtcgtggtattcct
ggacctcctggtcctccagggggggcaggacttccgggagagcttggccgtgttggacca
attggcgaccctgggagaagaggaccacctggcccccctggccccccgggacccagcgga
acaattggctttcatgatggagatccattgtgtcccaattcctgcccaccaggtcgctct
ggatatccaggcctgccaggcatgaggggtcataaaggggctaaaggagaggttggtgaa
cctggaagacaaggtcacaagggtgaagaaggggaccagggcgagcctggagaggttgga
gctcaaggacctccgggagctcaaggtttgcgaggcatcaccggcatagctggggccaaa
ggggaaaaaggtgctcggggcttagatggagaacctgggcctcaaggtctccctggtgca
cctggtgatcaaggacagcgaggacctccaggagaaataggtcccaagggagacagaggg
gctcaaggttctcgaggaattcctggtctccctggacccaaaggggacacgggcctgcca
ggtgtggacggccgggaaggaatacctggaatgcctggaacaaagggtgaaccagggaaa
cctgggcctcctggtgaagcgggattgcagggattacctggtatacccggaattcctggt
gcaaagggtgttgctggtgaaaagggtaacacaggtgctccagggaagcctggtcaattg
gggaattcaggcaaaccgggccaacaggggccgccaggagaggtgggacctcgaggacct
cgagggcttcctggcagtagaggagaaataggaccagtaggacccccaggaccgccaggt
aaactgggttctctcggcagccctgggctccctggcctgcctggccccccaggacttcct
ggaatgaaaggtgacaggggtgtagttggtgaacctggtccaaagggtgaacagggtgtc
tctggtgaagagggtgaagcaggagaaaggggtgaactcggagatataggattacctggc
ccaaaaggatccgtaggtaaccctggggagcctggcttgaggggacctgaaggaagccgg
gggcttcctggagtggaaggacctcgaggaccacctggcccgcgaggcgtgcagggagaa
cagggcgccactggcctgccggggattgaaggtcctccaggtagagcaccaactgatcag
cacattaagcaggtttgcatgagagtcatgcaagagcattttgctgcgatggctgctagc
ctcaagcgtccggaatcaggagcctctggcctccctgggcgtcctggtccccctggcccc
ccaggtccccctggagagaatggtttcccaggccagatgggacttcgtggccttccaggc
atgaaagggccccctggggctcttggtttgaggggacctaaaggtgacatgggagaaaga
ggtgatcgtggccctccaggaagaggtcccaaaggtttgcccggagctacaggtcttcca
ggtgacccgggacctgccagctacgggaggaatggccgggacggcgagcgaggaccccca
ggggtggcaggcattcctggtgtacccggccccccaggccctcctgggcctcctggtttc
tgcgaaccagcctcctgcaccatgcaggctgggcagcgggcatttaatagcaagggtcct
gaccagtga
DBGET
integrated database retrieval system
