Sus scrofa (pig): 100155583
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Entry
100155583 CDS
T01009
Symbol
ABCA4
Name
(RefSeq) LOW QUALITY PROTEIN: retinal-specific ATP-binding cassette transporter
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
ssc
Sus scrofa (pig)
Pathway
ssc02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
100155583 (ABCA4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssc02000
]
100155583 (ABCA4)
Transporters [BR:
ssc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
100155583 (ABCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
AAA_15
AAA_29
Motif
Other DBs
NCBI-GeneID:
100155583
NCBI-ProteinID:
XP_020945843
Ensembl:
ENSSSCG00000006890
LinkDB
All DBs
Position
4:123202720..123333044
Genome browser
AA seq
2339 aa
AA seq
DB search
MGFARQIRLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNVNPLYSQHECHFPNKA
MPSAGMLPWLQGIFCNVNNPCFQSPTPGESPGIVSNYNNSILARVYRDLQELLIEAPESQ
HLGQVWTELRTLSQLMNTLRTHPERIAGRGIRIRDVLKDEETLTLFLTKNIGLSDSVIDL
LINSQVHPEQFAHGVPDLVLRDIACSEALLERFLIFPQRRGVPAVREALCPLSQGALQWM
EDTLYANVDVFKLFRVLPRLVDGGSQGVDLRSWGRILSDMSPRIQEFIHRPSVQDLLWVT
RPLVQAGGPETFTQLMDSLSGLLCGYPEGGGSRVFSFNWYEDNNYKAFLGIDSTRKDPVY
SYDKRTTTFCNALIQRLESNPLTKIAWRAAKPLLMGKILFTPDSPATRRILKNANSTFEE
LERVRTLVRAWEEVGPQIWYFFDKSTPMAMIRDSLENPTVKAAFNRQFGEGGVTAEAILS
FLYRGPREGRADDVASFDWRDVFNVTDRTLRLANQYLECLILDKFESYDDEFQLTQRALS
LLEENRFWAGVVFPDLYPWTSSLPPHVRYKIRMDIDVVEKTNKIKDRYWDSGPRADPVED
FRYIWGGFAYLQDMVEQGITRSQAQAEVPVGIYLQQMPYPCFVDDAFMIILNRCFPVFMV
LAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSICLLTLFIM
HGRILHYSNPFILFLFLLAFSTATIMQCFLLSTCFSRANLAAACSGVIYFTLYLPHILCF
AWQDRMSADLKMAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPMEGDEFSFLMSM
KMMLLDAALYGLLAWYLDHVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPV
TEEMEDPEHPEGVNECFFERELPGLVPGVCVKNLVKTFEPYGRPAVDRLNITFYENQITA
FLGHNGAGKTTTLSIMTGLLPPTSGTVLVGGKDIETSLDAIRQSLGLCPQHNILFHHLTV
AEHILFYAQLKGKPWEEAQLETEAMLEDTGLHHKRNEEAQHLSGGMQRKLSVAIAFVGDA
KVVVLDEPTSGVDPYSRRSIWDLLLKYRPGRTIIMSTHHMDEADLLGDRIAILAQGRLYC
AGTPLFLKSCFGTGFYLTLVRKTKTVQSHGRGCAGTCSCASKGVSGRCPACVNEMTPEQV
LDGDVSELVDVVHHHVPEAKLVECIGQELIFLLPSKNFKQRAYASLFRELEETLADLGLS
SFGISDTPLEEIFLKVTEDSGPGPLFAGSTRQNKEDVSLRHPCSGPPGKARQTPQGTDGG
CPEPAPPLGGEGHGRLNTGARLVAQHVQALLVKRFHHTVRSRRDFLAQIVLPATFVCLAL
MLSIIIPPFGDYPALTLHPWMYGQQYTFFSMDQPDSELLATLADVLVNKPGFGNRCLKGE
WLPEFPCGNSTPWKTPSVSPDVTHLLQKQKWTADQPSPACRCSTREKLTMLPECPEGAGG
LRPRSXRTRLVPQRIQRSTEILQDLTGRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGI
SIGGKLPPPPITAEALVEFLSDLGQLMNVSAGPFTREASTEMSAFLKHLETEDNIKVWFN
NKGWHALVSFLNVAHNAILRASLREASSPEEHGITVISQPLNLTKEQLSEITVLTTSVDA
AVAICVIFAMSFIPASFVLYLIQERVSQAKHLQFVSGVSPTTYWLTSFLWDMMNYAVSAA
LVVSIFVGFQKKAYTSPDNLPALVALLLLYGWAVIPMMYPASFLFDVPSTAYVALACANL
FIGINSSAITFVLELFENNQTLLRFNAMLRKLLIIFPHFCLGRGLIDLALSQAVTDVYAR
FGEEHSSSPFQWELIGKNLAAMAAEGVVYFLLTLLIQHQFFFRRWTTEPATEPIDNEDDD
VAEERQRIIGGGTKTDILRLNELTKIYPGASSPAVDRLCVGVRPGECFGLLGVNGAGKTT
TFKMLTGDTTVTSGDATVAGKSILTNIADVHQSMGYCPQFDAIDDLLTGREHLHLYARLR
GVPAEEIKRVTDWSIQSLGLSLYADCLAGTYSGGNKRKLSTAIALIGCPPLLLLDEPTTG
MDPQARRMLWNTIMGIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTTQHLKYK
FGDGYIVTMKIKSPKDDLLPDLGAVEQFFRGSFPGSVLRERHHNMLQFQVASASLARIFR
LLVSHKDSLLVEEYSVTQTTLDQVFVNFAKQQTEMTHDFPLHPRAAGASRQAKKYQDDGW
RNNRRYLSWPVIALRIGASRFAPGHSTPCTEHIRPTSPEREQEKELEKEVDKGNPAPQR
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgccaggcagatcaggcttctgctctggaagaactggaccctgcgcaaaagg
caaaagattcgctttgtagtggaactcgtgtggcctttatctttatttctggtcttgatc
tggttaaggaatgtcaacccgctctacagccaacacgaatgccattttcccaacaaggcg
atgccctcagcaggaatgctgccatggctccaaggaattttctgcaatgtgaacaatcct
tgttttcaaagtcccaccccaggagaatctcctggaattgtgtcaaactataataactcc
atcttggcaagggtatatcgagatcttcaagaactcctcatagaagcaccagagagccag
cacctcggccaggtttggacagaactccgcaccttgtcccaactcatgaacaccctccgg
acgcaccctgagaggattgcaggacggggaatacggattcgggatgtcctgaaagacgag
gagaccctgacactgtttctcacgaagaacatcggcctgtcggactcggttatcgacctt
ctcatcaactcccaagtccatccagagcagtttgctcacggagtcccagacctggtgctg
agggacatcgcctgcagcgaggccctcctggagcgcttcctgatcttcccgcagcgccgc
ggggtgccagcagtgcgagaggccttgtgccccctctcccagggggccctgcagtggatg
gaagacactctgtacgccaacgtggacgtcttcaagctcttccgtgtgcttcccagactc
gtagacggcggttctcagggtgtcgatctgaggtcctggggaagaatattatctgatatg
tcaccaagaattcaagaatttatccaccggccgagcgttcaagacttgctgtgggtgacc
aggccgctcgtgcaggctggcggtccagagacctttacccagctgatggacagcctgtct
ggcctgctgtgtggctacccagagggaggaggctctcgggtgttctccttcaactggtac
gaagacaacaactataaggccttcctggggattgactccacaaggaaagacccagtctat
tcttacgacaaaagaacaacgaccttttgtaatgcgttgatccagcgcctggagtcaaac
cctctcaccaaaatagcctggagggcagcaaagcctttgctgatgggaaaaatcctcttt
acgccagattcccccgcaacgcgcaggatcctaaagaacgccaattcgacctttgaagag
ctggagcgggtcaggacattggtcagagcctgggaagaagtagggccccagatctggtac
ttctttgacaaaagcacgccgatggccatgatcagagactccctggagaacccgacggta
aaagccgctttcaacaggcaatttggcgagggcggtgttactgctgaagccattctgagc
ttcctctacaggggccctcgagagggccgggccgacgacgtggccagcttcgactggagg
gatgtatttaacgtcaccgatcgcaccctgcgcctggctaatcagtacctggagtgcctg
atcctggataagtttgaaagctacgatgatgaatttcagctcacccaacgagctctgtct
ctgctggaggaaaacaggttctgggctggcgtggtattccctgacctgtatccttggacc
agctccctgccaccccacgtgaggtacaagatccgaatggacatagatgtggtggagaaa
accaacaagatcaaagacaggtactgggattctggccccagagccgaccccgtggaagac
ttccgttacatctggggagggtttgcctacctgcaggacatggttgaacaggggatcaca
aggagccaggcccaggccgaggtgcccgtcggcatctatctccagcaaatgccttacccc
tgcttcgtggatgacgcttttatgatcatcctgaaccgctgcttccctgtcttcatggtg
ctggcctggatctactccgtctccatgaccgtaaagagcatcgtcttggagaaggagttg
cgactgaaggagaccttgaaaaaccagggtgtctccaatgccgtgatttggtgcacctgg
ttcctggacagcttttctatcatgtcgatgagcatctgcctcctgacactcttcatcatg
catggaaggatcctacattacagcaatccgttcatcctcttcttgttcctgttggctttc
tccactgctacgatcatgcagtgcttcctgctcagcacctgcttctccagggccaacctt
gcagcagcctgtagtggcgtcatctacttcaccctctacctgccccacattctctgcttc
gcctggcaggaccggatgtccgccgacctgaagatggctgtgagcctgttatcacccgtg
gcatttggatttggcaccgagtacctggttcgcttcgaggagcaaggcctggggctgcag
tggagcaacatcgggaatagtcccatggaaggggatgaattcagttttctcatgtccatg
aagatgatgcttcttgatgctgctctgtatggcttgcttgcctggtatcttgaccatgtt
tttccaggggactatggaactccacttccttggtactttcttttacaagagtcttattgg
cttggtggtgaagggtgttcgacccgagaagaaagggcgctggagaagacagaacctgtg
acggaggagatggaggacccggagcacccggagggagtaaatgagtgcttcttcgaacgc
gagctcccgggcttggtccccggcgtgtgcgtgaagaatctggtaaagacttttgagccc
tatggccggccggccgtggaccgcctgaacatcaccttctacgaaaaccagatcaccgcc
ttcctcggccacaacggagcggggaaaactaccaccttgtccatcatgacaggtctgttg
ccaccgacatccgggaccgtgctcgttgggggaaaggacatcgaaaccagcctggatgcc
atccggcagagcctgggcttgtgtccacagcacaacatcctgttccaccacctcaccgtg
gccgagcacatcctgttctacgcgcagctgaaagggaagccctgggaggaggcccagctg
gagacggaagccatgctggaggacacaggcctccaccacaagaggaacgaagaagcgcag
catctgtcaggtggcatgcagaggaagctgtcggttgccattgccttcgtgggagatgcc
aaggtggtggttctggatgagcccacctccggggtggacccctactcgaggcgctcaatc
tgggacctgctcctgaagtatcgcccaggcagaaccatcatcatgtccactcaccacatg
gacgaggccgacctcctcggggatcgaatcgccatccttgcccaggggcggctctactgc
gccggcaccccgctcttcctcaagagctgctttggcaccggcttctacttgaccttggtg
cgcaagacgaagaccgtccagagccacggcagaggctgcgcggggacctgcagctgtgcg
tctaagggcgtctccggcaggtgtccagcctgtgtcaatgagatgactccagagcaagtc
ttggacggggacgtgagcgagctggtggatgtggttcaccaccacgttccggaggcgaag
ctggtggagtgcattggtcaagagcttatcttccttcttccgagtaagaatttcaagcag
agagcctatgccagccttttcagggagctggaggagacgctggctgacctggggctcagc
agctttggaatttccgacactcccctggaagagatttttctgaaggtcacggaggattct
ggcccaggacctctgtttgcaggcagcactcggcagaacaaagaagacgtcagcctccga
cacccctgctcgggtcctcctgggaaagcgagacagactccccagggcaccgacggcggc
tgcccggagccggctcctcccctggggggcgaggggcacggccggctcaacacgggagcg
cggctggtggcccagcacgtgcaggcgctgctagtcaagcggttccaccacaccgtccgc
agccgcagggacttcctggcccagattgtgcttccggccacttttgtgtgtttggctctc
atgctctccatcatcatcccgcctttcggtgactatcctgctctgacccttcacccctgg
atgtatgggcagcagtacaccttcttcagcatggaccagccggacagtgagctgctcgcg
acactggcagacgtcctcgtgaacaaaccaggctttggcaaccgctgcctgaaaggagag
tggcttccggagttcccctgtggcaattcaaccccctggaagactccctctgtgtccccg
gacgtcacccacctgctccagaagcagaagtggacagcagaccagccctcgccggcctgc
aggtgcagcaccagagagaagctcaccatgctccctgagtgccccgagggcgcagggggg
ctccgcccccgcagttaacgcacacgtctcgttccccagaggatccagcgcagcaccgaa
attctgcaagacctcaccggcaggaacatctccgacttcttggtaaaaacgtatcctgct
cttatacgaagcagcttgaagagtaaattctgggtcaatgaacagaggtacggaggaatc
tccatcggaggaaagctgccgcctccccccatcactgcggaagcactggttgagttttta
agcgaccttggccagttaatgaacgtgagcgcgggccctttcaccagagaagcctctaca
gaaatgtctgctttccttaaacatctagaaactgaagacaacataaaggtgtggtttaac
aacaaaggctggcatgccctggtcagcttcctcaacgtggcccacaacgccatcttgcgg
gccagcctgcgcgaggccagcagccccgaggagcacggcatcaccgtcataagccagccc
ctgaacctgaccaaggagcagctctccgagatcacagtgctgaccacttcagtggacgct
gcggtggccatctgcgtgattttcgccatgtccttcatccctgccagctttgtcctctat
ttgatccaggagagggtgagccaagccaagcacctccagtttgtcagcggagtgagcccc
accacctactggctgaccagcttcctctgggacatgatgaattacgctgtgagcgccgcg
ctggtggtgagcatcttcgtcgggtttcagaagaaagcctacacgtccccggacaacctt
cccgccctggttgctctgctcctgctgtacgggtgggcggtcattcccatgatgtaccca
gcgtccttcctctttgacgtccccagcacagcctacgtggccttagcttgtgctaatctg
ttcatcggcatcaacagcagtgccatcaccttcgtcttggaattatttgagaataaccag
acactgctcaggttcaatgccatgctgaggaagctgctcatcatcttcccccacttctgc
ctgggccggggcctcattgacctggcgctgagccaggctgtgacagacgtctatgcccgg
tttggtgaggagcactcctccagtcccttccagtgggagctgatcgggaagaacctggct
gccatggcagcagaaggggtggtgtacttcctcctgaccctcctcatccagcaccagttc
ttcttccgccgatggacgacagagccggccacggagcccatcgacaatgaagatgatgat
gtggctgaagaaagacaaagaattatcggtgggggaactaaaactgatatcttaaggcta
aatgaactaaccaagatctacccaggcgcgtccagcccggcggtggacaggctgtgcgtg
ggagtccggcccggagagtgctttggcctcctgggagtgaacggagctggcaaaacgacc
acgttcaagatgctcactggggacaccacagtgacctcaggagatgccaccgtagcaggc
aagagtattttaaccaatattgctgacgtccatcaaagcatgggctactgtccgcagttt
gatgccatcgacgacctgcttacagggcgagaacatctccacctttacgcacggcttcgg
ggtgtgccagccgaggaaatcaagagggtgacagactggagtattcagagcctgggcctg
tccctctacgcagactgcctggccggcacctacagcggaggcaataagcggaaactctcc
acagccatcgcgctgataggctgcccgccgctcctgctgctggacgagcccaccacgggc
atggacccccaggctcgccgcatgctgtggaataccatcatgggcatcatcagagaaggg
agagctgtggtcctcacctcccacagcatggaggagtgcgaggccctgtgcacccggctg
gccatcatggtgaagggcgccttccagtgtctgggcaccactcagcacctcaagtacaag
tttggagacggctacatcgtcacgatgaaaatcaagtcgccgaaggacgacctgcttccc
gacctgggcgccgtggagcagttcttccgggggagcttcccgggcagcgtgctgcgggag
cggcaccacaacatgctccagttccaggtcgcctccgcctccctggccaggatcttccgg
ctgctggtctcgcacaaggacagcctgctcgtcgaggagtactcggtcacgcagaccacg
ctggaccaggtgtttgtgaactttgctaaacagcagactgaaatgacgcacgacttccct
ctgcacccgcgagcggctggagccagccgacaggccaagaaatatcaagatgatggatgg
agaaacaatagaaggtatttatcatggcctgtgatagctcttaggataggtgcctccagg
ttcgcgcccggacacagcaccccatgtacggagcacattcgtcccacctccccagaaaga
gaacaagagaaggagctggagaaggaagtggacaaaggcaatcccgcgcctcagagatga
DBGET
integrated database retrieval system
