KEGG   Sus scrofa (pig): 100156939
Entry
100156939         CDS       T01009                                 
Symbol
COPB2
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    100156939 (COPB2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssc04147]
    100156939 (COPB2)
Membrane trafficking [BR:ssc04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    100156939 (COPB2)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   100156939 (COPB2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st EIF3I Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 ASA1 WD40_MABP1-WDR62_1st DSE1_N Beta-prop_WDR41 NBCH_WD40 Beta-prop_SCAP PEP5_VPS11_N Beta-prop_IFT140_1st TRM82_WD CFAP251_N Beta-prop_NOL10_N Beta-prop_SPT8 WD40_RFWD3 Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_LRRK2 Beta-prop_WDR35_TULP_N PAC11 Beta-prop_ACSF4 Helicase_dom4_arc TPR_ZFYVE26
Other DBs
NCBI-GeneID: 100156939
NCBI-ProteinID: XP_005669941
Ensembl: ENSSSCG00000011662
UniProt: A0A4X1TS96 F1SL54
LinkDB
Position
13:complement(80220460..80264808)
AA seq 906 aa
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD
MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLG
REEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSVVKIFKNFKE
KKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILKYLSEKVLAAQETHEGVTEDGIEDGFEVLGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNASMVNKLAEGAE
RDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKV
NQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEEAK
GFQPSRSAAQQELAGKPASPTPVIMATHTGNKEEKSLLELEVDLDNLELEDIDTTDINLD
EDILDD
NT seq 2721 nt   +upstreamnt  +downstreamnt
atgcctctgcgactcgatatcaagagaaagctaactgctcgatccgatagagttaagagt
gtggatttgcatcctacagagccatggatgttggcgagtctttacaatggcagtgtgtgt
gtttggaatcatgaaacacagacactggtgaaaacattcgaagtatgtgatcttcctgtt
cgagccgcaaagtttgttgcaaggaagaattgggttgtgacaggagcggatgacatgcaa
attagagtgttcaactacaacactctggagagagttcatatgtttgaagcgcattcagac
tacattcgatgtattgccgttcatccaacccagcctttcattctaactagcagtgatgac
atgcttattaaactctgggactgggataaaaaatggtcttgctcacaagtgtttgaagga
cacacccattatgttatgcagattgtgatcaaccccaaagataacaaccagtttgccagc
gcttctttggacaggactatcaaggtgtggcagctgggctcctcatcaccaaacttcact
ctggagggacatgagaaaggcgtgaattgcatcgattactacagtggtggcgacaagcca
tacctcatttcaggtgcagatgaccgtcttgtgaaaatatgggactatcagaataaaaca
tgtgtgcaaacgctggaggggcacgcccaaaacgtgtcttgtgccagttttcatcctgag
ctgccaatcatcatcacaggttcagaggatggaactgtgcgaatttggcattcaagcacc
tatcgcctcgagagtaccttgaattatggaatggagagggtgtggtgtgtggccagtctg
agagggtccaacaacgttgctttgggctatgatgaagggagcatcattgttaagcttggt
cgggaggaacctgccatgtccatggatgccaatggaaagataatttgggccaaacattca
gaggtccagcaggccaacctaaaagcaatgggagatgctgaaattaaagatggagaaaga
ttgccactggcagtaaaggatatgggcagttgtgaaatataccctcagactattcagcac
aatcctaatgggcggtttgttgtggtgtgtggtgatggcgagtatatcatctatacggca
atggccttaagaaacaagagctttgggtctgcccaggagtttgcgtgggcccacgattct
tcagaatatgcgatcagagagagcaacagtgttgtaaagatatttaagaactttaaggaa
aaaaaatcatttaaaccagattttggagctgaaagtatctatggaggcttcttactggga
gtgagatctgtcaatggcttagctttctacgattgggacaatacagagctcatacgcagg
attgaaattcagcccaaacacattttctggtctgactctggagagctagtctgtattgct
actgaggaatcattttttatccttaagtatctgtcggagaaagtcttggctgcacaggaa
acacacgagggggttactgaagatggcattgaagatggctttgaggttcttggtgagatt
caggaaattgtgaaaacagggctgtgggtaggcgactgcttcatatacacaagttctgtg
aacagattaaattattatgttggaggagaaatagtcaccattgcccacttggacaggaca
atgtatctcctgggctatattcctaaagacaacaggctttatttgggggataaggaacta
aatatcgttagctactccctgctggtttcagtgctggaataccagacggctgtcatgcgg
agggacttcagcatggctgacaaggtcctcccgaccatcccaaaagagcagaggaccaga
gttgcacactttttggaaaagcagggcttcaagcagcaagctcttacagtatccacagat
cctgagcatcgctttgaacttgctcttcagcttggagaactaaaaattgcataccagctg
gccgtggaagcagagtcagaacagaagtggaaacaacttgctgaacttgccatcagtaaa
tgccagtttggcctggcccaggagtgcctgcaccatgcacaggactatgggggtctgttg
cttttggccactgcctctggaaatgctagcatggtgaacaagctagcagagggtgcagag
cgagacggcaagaataatgtggcattcatgagctactttttacagggcaagcttgatgct
tgcctggagctcttgattagaactggacgactgccagaagctgccttcttggcacggact
tacttacccagtcaggtttcaagggtggtgaaactctggagagaaaatctctcaaaagtc
aatcagaaagcagccgaatcccttgctgatccaacagaatatgaaaacctctttcctgga
ttaaaagaagcctttgttgtggaagaatgggtgaaggaaacacatgctgacctgtggccg
gccaaacaatacccactggtcacgccaaatgaagaaagaaatgttatggaagaggcaaaa
ggcttccagccgtcaagatctgcagctcagcaggaacttgctgggaaacctgcttctcct
actcctgttattatggccacccacacaggcaacaaagaagaaaagagtttacttgaactg
gaagtagatttggataatttggaattagaagacattgacacaacagatatcaacctggat
gaagatattttggatgattga

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