Sus scrofa (pig): 100156966
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Entry
100156966 CDS
T01009
Symbol
EDC3
Name
(RefSeq) enhancer of mRNA-decapping protein 3
KO
K12615
enhancer of mRNA-decapping protein 3
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100156966 (EDC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100156966 (EDC3)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100156966 (EDC3)
mRNA degradation factors
5'-3' decay
Decapping complex
100156966 (EDC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Edc3_linker
FDF
YjeF_N
LSM14
DUF5096
Motif
Other DBs
NCBI-GeneID:
100156966
NCBI-ProteinID:
XP_001927907
Ensembl:
ENSSSCG00000001903
UniProt:
A0A8D0SQY2
A0A4X1TMS6
LinkDB
All DBs
Position
7:58828693..58895475
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AA seq
508 aa
AA seq
DB search
MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
ELKILEIPGPGENQHFGDLHQAELGPSGVGCQVGIGQNGMGKLVKKPASSSSAPQNIPKR
TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGSRSRGIPNER
PTRYRHDENILESEPIVYRRITVPHNVSKEFCTDSGLVVPSVSYELHKKLLSVAEKHGLT
LERRLEMTGVCASQMALTLLGGPNRLNPKNIHQRPTVALLCGPHVKGAQGISCGRHLANH
DVQVILFLPNFMKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENAFLR
DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRVYLCDIG
IPQQVFQEVGINYHSPFGCKFVIPLHSA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggctacggattggctgggcagtattgtgtccatcaactgtggagatagcttgggtgtc
tatcagggaagagtatcagcagttgatcaggtcagccagaccatttctcttacccggcct
ttccacaatggagtgaagtgccttgtgccagaagtcaccttcagggcaggtgacattacg
gaactaaaaattctggagataccaggtcctggagaaaaccaacattttggagaccttcat
caggcagaattaggcccctctggtgttgggtgccaagtaggtattggtcagaatggcatg
ggcaagttggttaaaaagccagcctcttccagcagtgcccctcagaacatccctaagagg
acagatgtcaagagccaagatgttgccgtttctccccagcagcagcagtgctcaaagagc
tatgtggataggcacatggagtccttgagtcagtccaaaagcttccggcgtcggcacaac
tcttggtcatctagtagcaggcacccaaatcaggcaactccaaagaaaagtggcttaaag
aatggccaaatgaagaataaagatgatgagtgctttggggatgatattgaggagatccca
gacacagattttgattttgaagggaacttggccctttttgacaaggcagctgtgtttgag
gagattgatacctatgagaggaggagtggtagccgttcccggggcatcccaaatgagaga
cctactcggtaccgccacgatgagaacatcctggagtcagagcccattgtctaccgacgg
atcacagtgccccacaatgtaagcaaggagttctgcacagactctggcctggttgtccca
agtgtttcctatgagttgcataaaaagctgttgtctgtggctgagaaacatggcttgacc
ctggaacggagactggagatgacaggtgtgtgtgccagccagatggcactgaccctgctt
ggaggacccaacagattgaatcccaaaaatattcaccagaggcctacagtggccctgcta
tgtgggccccatgtgaagggggctcagggtatcagctgtggaaggcatctagctaaccat
gatgtccaggtcatcctcttccttcccaacttcatgaagatgctggaatccatcaccaac
gagctgtctctcttcagcaagacccaaggccaacaagtatctagcctcaaagatctgccc
actagccctgtggacctggtgatcaactgcctggattgccccgagaatgccttcctgcgg
gatcagccctggtacaaggcagctgtggcctgggccaaccagaaccgagcgccagtactc
agcatagaccctcctgtgcatgaagttgaacagggcatcgatgccaagtggtcgctggct
ctgggcctgcctctgcctttaggggagcatgccggccgcgtctatctgtgcgacatcggc
attccccagcaggtgttccaggaggtgggcatcaactaccactcgccctttggctgcaag
tttgtcatcccactgcactccgcctag
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