Sus scrofa (pig): 100157199
Help
Entry
100157199 CDS
T01009
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100157199 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100157199 (COL13A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100157199 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100157199
NCBI-ProteinID:
XP_013845868
Ensembl:
ENSSSCG00000010256
LinkDB
All DBs
Position
14:72786780..72953093
Genome browser
AA seq
741 aa
AA seq
DB search
MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLL
AHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCP
PGPPGPAGRPGLPGDKGAIGMPGRVGAKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFP
GFPGPIGLDGKPGRPGPKGEMGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTF
QGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGE
RGMPGMPGKQGAKGEPGTPGAKGDPGATGKPGPPGLPGKRGQRGEKGAVGSPGLLGLLGQ
KGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPA
GPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL
PGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGP
PGLDGPTGEKGEPGGQGRPGVTGLPGPIGLPGFTGEKGEPGEKGDPGVEVPGPPGPEGPP
GPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP
GPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAP
GLDAPCPLGEDGLPVQGCWNK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgctcccgcaaagcgacagactccggtgcccgcggccccggggagctg
ggcgcgcccgggacggtggcgctggcggtggcgccggtagagcgctgcgcgcggctgccg
agcccggggtcctgcgggctgctggcgctggccctctgctcgctggcgctcagcctgctc
gcccactttcggacggccgagctgcaggcccgggtgctgcgcctggaagcagagcgtggg
gagcagcaaatggagccggctattttgggacgagtcaaccaactgctggatgagaaatgg
aagctccactctcggaaacgccgggaggccccaaagacatctccagggtgtcactgccca
ccaggacctcctggtcccgctggaagacctggcctcccgggggacaaaggtgccattggg
atgcccggacgtgtgggagcaaagggccaaccaggcgagaagggcgccccaggagatgcc
gggatgtccatcatcggtccccgtggcccccctggtcagccgggcacacgaggttttcct
ggatttccgggtcccattgggctggacggcaaaccgggccgccccggaccaaagggagag
atggggcctcaaggacaaaaaggagaaaagggtcagtgtggagagtacccccaccggctg
ctgcccctcctcaattcagtgcggctggctccacccccagtcattaaaaggcggaccttc
cagggtgaacagggccaggctggcatccaaggcccgccagggccaccaggccctcctgga
ccaagtggacctctggggcacccaggactgccagggcccatggggccgcctggcttacct
gggcctcctggaccaaagggagacccggggatccagggctaccacggccggaagggagag
cggggcatgccggggatgccaggcaaacaaggagccaagggtgagccagggaccccagga
gccaagggagacccaggagcaacagggaagccggggcccccaggtttgccgggaaagagg
gggcagaggggtgagaagggggctgtgggttcccccgggctactcggcctcctggggcag
aagggagaaaaaggtgatgccggcaactccattggaggaagcagaggggagcccggtccc
ccagggctcccggggcccccggggccaaagggggacgctggagctgatggccaggctggc
cccccaggacgacaaggagacaagggggagcctggagcagctggagaacagggacctgct
ggccccaagggctccaagggtgaaccagggaaaggagagctggtggactacaacgggaac
atcagtgaggctctccaggagatccggacactggccttgatggggccccctggccttccc
gggcagattggcccaccaggagctccagggatcccaggccagaagggggagattggactg
ccagggcctcctggacatgatggggaaaagggacctcgaggcaaaccaggagacatgggc
cctcctggcccccaaggccccccaggaaagcctgggcctgcaggaatgaagggagaagat
ggacacacagggagcccgggagagaagggggagaaaggggagacggggcagccaggccca
ccgggtctagacggcccaactggggagaaaggagaaccaggagggcaagggagaccagga
gtgaccggattgcctggcccaattgggctcccaggatttacaggagagaagggagaacct
ggggagaagggtgacccaggagtggaggttcctggaccaccagggccagaggggcctccg
ggacctccggggctccaaggcgttcctggaccaaagggggaagcaggactagatggagca
aaaggagaaaagggcgtccagggagaaaaaggagaccgaggtcctctgggattacccgga
gcttcaggtttggacggcaggcctgggccaccgggtactccaggaccaattggagttcca
ggcccagcgggaccaaagggagagaggggcagcaaaggtgaccctggaatgacaggacca
acgggagcagcagggcttcctggtttacatggaccacccggggacaaaggaaaccggggg
gaaagggggaagaaaggctctagagggcctaagggggataagggagaccaaggagcgcct
ggattagatgccccctgtccattgggcgaagatggcttgccagtccagggctgctggaac
aagtga
DBGET
integrated database retrieval system
