Sus scrofa (pig): 100157539
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Entry
100157539 CDS
T01009
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X7
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03082
ATP-dependent chromatin remodeling
ssc04714
Thermogenesis
ssc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100157539 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100157539 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100157539 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100157539 (SMARCC2)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100157539 (SMARCC2)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100157539 (SMARCC2)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100157539 (SMARCC2)
PBAF complex
100157539 (SMARCC2)
GBAF(ncBAF) complex
100157539 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
100157539
NCBI-ProteinID:
XP_001929203
Ensembl:
ENSSSCG00000000382
ENSSSCG00000022002
LinkDB
All DBs
Position
5:complement(21563426..21586790)
Genome browser
AA seq
1129 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEEKNNASHVVCP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDEARAEGQATEEKKEPKEPREGVGAVEEEAKEKTSEVPKKDDEKGKEGDSEKE
SEKSDGDPIVDPEKEKEPKEGQEEVLKEVESEGERKTKVERDIGEGNLSTAAAAALAAAA
VKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD
RQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPTVHGLAMAP
ASVAPAPAGSGAPPGSLGPSEQIGPAGSAVGPQQQQPAGAPQPGAVPPGVPPPGPHGPSP
FPNQQTPPSMMPGAVPGSGHPGVADPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggcttggcaagaactacaagaagtatatacaa
gctgaaccacctaccaacaagtccctgtctagcctggttgtacaattgctacaatttcag
gaagaagtttttggcaaacatgtcagcaatgcacctctcactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggctccctgtgccacatacttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgcaat
gtggaaatgttcatgaccattgagaagtccttggtgcagaataattgcctgtctcgacct
aacatttttctgtgcccagaaattgaacccaaactgttagggaaattaaaggacattatc
aagagacatcaggggacggtcactgaggagaagaacaatgcctcccatgttgtgtgtcct
gtcccagggaacctggaggaagaggaatgggtacggccagtcatgaagagggataagcag
gttcttctgcactggggctactatcctgacagttacgacacatggatcccagccagtgaa
attgaagcatctgtggaagatgctccaactcctgagaaacccagaaaggttcacgcaaag
tggatcctggacacagacaccttcaatgaatggatgaatgaggaagactatgaagtgaat
gatgacaaaaaccctgtctcgcgccgaaagaagatatcagccaagacattgacagacgag
gtgaacagcccagattcagatcgacgggacaagaaaggagggaactataagaagcggaaa
cgctccccctctccttcaccgaccccagaagctaagaagaagaatgccaagaaaggtccc
tcaacaccttacaccaagtcaaagcgtggccacagagaagaggagcaagaagacctgaca
aaggacatggatgagccctcaccggttcccaatgtggaagaggtgacgttgcccaaaaca
gtcaacactaagaaggactcagagtcagccccggtcaaaggaggcaccatgacggacctg
gatgaacaagaagatgagagcatggagactacgggcaaggatgaagatgagaacagtacg
gggaacaagggagagcagaccaagaatccggacctacacgaggacaatgtgaccgaacag
acccaccacatcatcatccccagctacgctgcctggtttgactataatagtgttcatgcc
atagagcggagggctctccccgagttcttcaacggcaagaacaagtccaagactccagag
atctacctggcctatcggaacttcatgatcgacacttaccgcctgaacccccaagagtat
ctcacatccaccgcctgccgcaggaacctggcgggtgatgtgtgtgccatcatgagggtc
catgccttcctagaacagtggggtctgattaactaccaggtggacgctgagagtcgacca
accccaatggggcctccgcccacctctcacttccacgtcttggcggacacaccatcgggg
ctggtgcctctgcagcccaagaccccgcagggccgccaggttgatgctgataccaaggct
gggcgaaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagacctctgcttcccagcaaatgctcaacttcccggacaaaggcaaggagaaaccg
acagacatgcagaacttcggactgcgcacagacatgtacaccaagaagaacgtcccctcc
aagagcaaagctgcggccagtgccactcgagagtggaccgaacaggagacgctgctactc
ctggaggcactggaaatgtacaaagatgactggaacaaggtatcagagcatgtgggaagc
cgcacgcaggacgagtgcatcttgcattttcttcggcttcccattgaagacccttacctg
gaggactctgaggcctccctgggccccctggcctaccagcccatccccttcagccagtca
ggcaaccctgtgatgagcaccgttgccttcctggcctctgtcgtcgatcctcgagtggcc
tctgctgcggccaagtcagccctagaagagttctccaaaatgaaggaagaggtacccacg
gccttggtggaggcccacgttcggaaagtagaagaagcagccaaagtgacaggcaaggcc
gacccagcctttggcttggaaagcagcggcattgcaggaaccacctcggatgagccagag
cggatagaggagagcgggactgacgaggcacgggcagagggccaggccacagaggagaag
aaggagcccaaggaaccccgagaaggagttggggctgtggaggaagaagcaaaggagaag
accagcgaggtgcccaagaaggatgacgagaaagggaaagaaggtgacagcgagaaggag
tcagagaagagtgatggggacccgattgttgatcctgagaaggagaaggagcccaaggaa
ggacaggaggaagtgctgaaggaggtggaatcggagggggaaaggaagacaaaggtggag
cgggacatcggcgagggcaacctctccaccgctgctgctgccgccctggccgctgccgcc
gtgaaggccaagcacttggctgccgttgaggagaggaagatcaaatccctggtggccctg
ctggtggaaacccagatgaagaagttggagatcaaactccggcactttgaggagctagag
acgatcatggaccgggagcgagaagcgctcgagtatcagaggcagcagctcctggccgac
agacaagccttccacatggagcagctaaagtatgcagagatgcgggcccggcagcagcac
ttccagcaaatgcaccaacagcagcagcagccaccaccggccctgcccccaggctcccag
cctatcccacctacaggcgctgcagggccaccgactgtccatggcttggctatggctccg
gcttctgtggcccctgctcctgccggcagcggggcccctcccggaagcttgggcccctct
gaacagattgggccggcagggtcagctgtggggccacagcagcaacaaccagctggagcc
ccccagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctcaccg
tttcccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcgggcac
ccaggcgtggcggacccaggcactcccctgcctccagatcccacggccccgagcccaggc
acagtcacccctgtgccacccccacagtga
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integrated database retrieval system
