Sus scrofa (pig): 100157937
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Entry
100157937 CDS
T01009
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100157937 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
100157937 (PRPF40A)
Spliceosome [BR:
ssc03041
]
Complex A
U1 snRNP components
U1 related factors
100157937 (PRPF40A)
Complex B
100157937 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100157937
NCBI-ProteinID:
NP_001231502
Ensembl:
ENSSSCG00000015867
LinkDB
All DBs
Position
15:complement(60388582..60440478)
Genome browser
AA seq
957 aa
AA seq
DB search
MRPGTGAERGGLMVSEMESHPPSRGPGDGERRLSGSSLCSSSWVSADGFLRRRPSMGHPS
MHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQAS
MQPALPPGVNNMDVAAGATSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQ
LLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMI
KAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASAST
SASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTG
EETSKQEAVADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMK
MIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTST
TRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDN
MANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSL
LRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDL
FKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLA
FNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAF
EDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSH
SKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKD
RESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaggccggggacgggagctgagcgaggaggcctcatggtgagtgaaatggagagccat
cctccctcgcggggtcccggggacggggagcggagattgtccggctcaagcctctgctcc
agctcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccctagc
atgcattatgccccaatgggaatgcaccctatgggtcagagagcgaatatgcctcctgta
cctcatggaatgatgccgcaaatgatgccccctatgggagggccaccaatgggacaaatg
cctggaatgatgtcttcagtaatgcctggaatgatgatgtctcatatgtctcaggcttcc
atgcaacctgctttaccgccaggagtaaataatatggatgtagcagcaggtgcaacatca
ggcgccaaatcaatgtggactgaacataagtcacctgatggaaggacctactactataat
actgaaacaaagcagtctacttgggagaagccagatgatcttaaaacccctgccgagcaa
cttttatctaaatgcccttggaaggaatacaaatctgactctggaaagccttactattat
aattctcaaacaaaagaatcccgctgggccaaacctaaagaacttgaggatcttgaagga
taccagaataccattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatc
aaagctgaagaaagcagtaaacaagaagagtgcaccacaacatcagcagccccagttcct
acaacagaaattccaaccacaatgagcaccatggctgctgcagaagcggcagctgctgtt
gttgcggcagcagctgcagccgcagctgcagctgctgcagccaatgccagtgcttccacc
tctgcttctagtactgtcggtggaactgttccagtcgttcctgagcctgaggttacttcg
attgttgctactgttgtagataatgaaaatacagtaacaatttcgactgaagaacaagca
caacttactagtacccctgctgttcaggatcaaagtgttgaagtgtctagtaatactgga
gaagaaacatctaagcaggaagccgtagctgattttactcctaaaaaagaagaggaagaa
aaccaaccagcaaaaaaaacatatacttggaatacaaaggaggaagcaaagcaagcattt
aaagaattactgaaagaaaagcgggtaccatcaaatgcttcatgggaacaagctatgaaa
atgattattaatgacccacgatacagtgctttagcaaagttgagtgaaaagaagcaggcc
tttaatgcttataaagtccagacagaaaaagaagaaaaagaagaagcaagatccaaatac
aaagaggctaaggaatcctttcaacgttttcttgaaaatcatgagaaaatgacttctaca
actagatacaaaaaagcagagcaaatgtttggagagatggaagtctggaatgcaatatca
gaacgtgatcgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaag
gagcaagcaaagcagttacgaaaaagaaattgggaagccttaaaaaacatacttgacaac
atggctaatgtgacatattctactacttggtccgaagcccagcagtatctgatggataat
ccaacttttgcagaagatgaggaattacagaacatggataaagaagatgcattaatttgc
tttgaagaacacattcgggctttagaaaaggaagaagaagaagaaaaacagaagagtttg
ctgagggaaaggagacgacagcgtaaaaatagagaatcttttcagatatttttagatgaa
ttgcatgaacatggacaactgcattctatgtcatcttggatggaattatatccaacaatt
agttctgatattagattcactaatatgcttggtcagccgggatcaactgcacttgacctt
ttcaagttttatgttgaggatcttaaagcacgttaccatgatgagaagaagataataaaa
gacattctaaaggataaaggatttgtagttgaagtaaatactacttttgaagactttgtg
gcaataatcagttcaacaaaaagatcaaccacattagatgcaggaaacattaagttagct
ttcaatagtttactagaaaaggcagaagcccgtgaacgtgaaagggaaaaagaggaggct
cggaagatgaaacgaaaagaatcggcatttaagagtatgttgaaacaagcaactcctcca
atagaattggatgctgtctgggaagatatccgggagagatttgtaaaagagccagcgttt
gaggatataactctagaatctgaaagaaaacgaatatttaaagattttatgcatgtgctt
gagcatgaatgtcaacatcatcattcaaagaacaagaaacattctaagaaatctaaaaaa
catcacaggaaacgttcccgctctcgatcagggtcagattcagatgatgatgacagccat
tcaaagaaaaaaagacagagatcagagtctcgctctgcttcagaacattcttctagtgct
gaatctgagagaagttataagaaatcaaaaaaacataagaagaaaagcaagaagagaagg
cataaatctgactccccagaatcagatgctgaacgagagaaggataaaaaagaaaaagac
cgggaaagtgaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacctaag
aaaaagactggaaaggattctggtaattgggacacttctggcagtgaactgagtgaaggg
gaattagaaaagcgcagaaggacccttctggagcaactggatgatgatcaataa
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