Sus scrofa (pig): 100271929
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Entry
100271929 CDS
T01009
Symbol
CLTC
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04142
Lysosome
ssc04144
Endocytosis
ssc04721
Synaptic vesicle cycle
ssc04961
Endocrine and other factor-regulated calcium reabsorption
ssc05016
Huntington disease
ssc05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100271929 (CLTC)
04142 Lysosome
100271929 (CLTC)
09150 Organismal Systems
09155 Excretory system
04961 Endocrine and other factor-regulated calcium reabsorption
100271929 (CLTC)
09156 Nervous system
04721 Synaptic vesicle cycle
100271929 (CLTC)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
100271929 (CLTC)
09164 Neurodegenerative disease
05016 Huntington disease
100271929 (CLTC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100271929 (CLTC)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100271929 (CLTC)
Membrane trafficking [BR:
ssc04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
100271929 (CLTC)
Exosome [BR:
ssc04147
]
Exosomal proteins
Proteins found in most exosomes
100271929 (CLTC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
TPR_1
Motif
Other DBs
NCBI-GeneID:
100271929
NCBI-ProteinID:
NP_001139599
UniProt:
A0A8D1ZIN9
C0MHR2
Structure
PDB
PDBj
LinkDB
All DBs
Position
12:35848894..35926028
Genome browser
AA seq
1675 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSN
PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVL
LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEV
VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS
KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQE
EKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLR
KEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGYSM
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattctgccaattcgttttcaggagcatcttcagctccagaacctgggtata
aacccagcaaacattggcttcagtaccctractatggagtcagacaarttcatctgcatt
agagagaaagtaggagagcaggcccaggtggtaattattgatatgaatgacccaagtaat
ccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaatt
gcactaaaagctgggaaaactcttcagatatttaacattgaaatgaaaagtaaaatgaaa
gcccataccatgactgatgatgtcaccttctggaaatggatctctttgaataccgttgct
cttgttacggataatgcagtttatcattggagtatggaaggagagtctcagccagtgaaa
atgtttgatcgtcattctagccttgcagggtgccagattatcaattatcgtactgatgca
aagcaaaagtggttacttctgactggcatatctgcacagcaaaatcgtgtggtgggagct
atgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagc
tttgcacagtttaagatggaaggaaatgcagaagaatcaactttattttgctttgcagta
cggggtcaggctggagggaagttacatattattgaagttggcacaccaccaacagggaac
cagcccttcccaaagaaggcagtggatgttttctttcctccagaagcacaaaatgacttt
cctgttgcaatgcagataagtgagaaacatgatgtagtattcttgattacgaagtatggc
tatatccacctctatgatcttgagactggtacctgcatctacatgaatagaatcagtggg
gaaacaatctttgttactgcacctcatgaagccacagctggaataattggagtaaacaga
aagggacaagttctctcagtatgtgtggaagaagaaaacataattccttatatcaccaat
gtcctacaaaatcccgatttggctctgagaatggctgtacgtaacaacttagctggtgct
gaagaactctttgcccggaaatttaatgctctttttgcccagggaaattactcagaggca
gcgaaggtggctgctaatgcaccaaagggaatccttcgtaccccagataccatccgtcgg
ttccagagtgttccagcccagccaggtcaaacttctcctctacttcagtactttggaatc
cttttggatcagggccagctaaacaaatatgaatccttagaactgtgtaggccggtactt
cagcaagggcggaaacagcttttggagaaatggttaaaagaagataagctggaatgctct
gaagaactgggtgaccttgtgaaatctgtggacccgacattggcacttagtgtataccta
agggctaatgttccaaataaagtcattcagtgctttgcagaaacaggtcaagtccagaag
attgttttatatgctaaaaaagttggatatactccagactggatcttcctgctgagaaat
gttatgcgtatcagtccmgatcagggacagcagtttgctcaaatgttagttcargatgaa
gaacctcttgctgatatcacacarattgtcgatgtgtttatggaatacaatctaattcag
cagtgyactgcattcytgcttgatgccctgaagaataatcgcccatctgaaggtccttta
cagacaaggctgcttgagatgaaccttatgcatgcacctcaagtcgcagatgctattcta
gggaatcagatgttcacgcattatgaccgggctcatatygctcagctgtgtgaaaaggct
ggcctcttgcagcgtgcattagaacacttcactgacttatatgatataaagcgtgccgtt
gttcacacacatcttcttaaccccgagtggttagtgaattactttgggtccttatcagta
gaagactccctggaatgcctcagggccatgctatctgccaatattcgacagaatctacag
atctgtgtgcaagtggcttctaagtatcatgaacagctgtcaactcagtctctrattgaa
ctwttcgaatctttcaagagttttgaaggtcttttttatttcctggggtccattgttaac
tttagtcaagacccagatgtgcactttaaatacattcaggcagcttgtaagactgggcag
atcaaagaagtagaaagaatctgcagagaaagcaactgttatgatcctgagcgagtcaag
aattttctcaaggaagcgaagctaacagatcagttaccacttatcattgtgtgtgatcga
tttgactttgtccatgatttggtgctctatttatatagaaataatcttcaaaagtatata
gagatatatgtacagaaggtgaatccaagtcgacttcctgtggtaattggaggattactt
gatgttgattgctctgaagatgtcattaaaaacttgattcttgttgtaagaggtcaattc
tctactgatgagcttgttgctgaagttgaaaaaagaaacagattgaaactgcttctgcct
tggctggaggccagaattcatgagggctgtgaagagcctgctactcacaatgcattagcc
aaaatctacatagacagtaataacaacccagagagatttcttcgagaaaatccttattat
gacagtcgtgttgttggaaagtactgtgagaagagagatccacatctggcctgtgttgct
tatgagcgtggccagtgtgatctggaacttattaatgtttgcaatgagaattctctcttc
aaaagtctttcccgctatctggtacgcagaaaggatccagaattgtggggtagtgtgctg
ctggaaagcaatccttacagaagacccctgatcgatcaggttgtacagacagccttgtct
garactcaggaccctgaagaagtgtcagtaactgtcaaggcttttatgactgcagacctt
cctaatgaactcattgaactgctggagaaaattgtccttgataactctgtcttcagtgaa
cacaggaatctgcaaaatcttctgatcctcactgcaatcaaagctgaccgtacccgtgtt
atggaatatattaaccgcctggataattacgatgccccagatattgccaatattgccatc
agcaatgagctgtttgaagaagcatttgccatttttcggaaatttgatgtcaatacttca
gcagtgcaggtcttgattgaacacattggaaacttagaccgggcttatgagtttgctgaa
cgctgcaatgaacctgcagtctggagtcagcttgcaaaagcccagttgcagaaaggaatg
gtaaaagaagccattgattcttacatcaaagcagatgatccttcatcctacatggaagtt
gttcaggctgccaatactagtggaaactgggaagagctggtgaagtacttgcagatggcc
cgtaagaaggctcgtgagtcctatgtggagacagaattgatatttgcactggctaaaaca
aaccgcctcgcggagttagaagaattcatcaatgggccaaataacgctcatatccaacaa
gttggtgaccgttgttatgatgaaaaaatgtatgatgctgctaagttgttatacaataat
gtttccaattttggacgcttggcatctactctcgttcatctgggtgaatatcaggcagct
gttgatggagctaggaaagctaacagtactcgaacatggaaagaggtctgcttcgcgtgt
gtagatgggaaggagttccgtctcgctcagatgtgtgggcttcacattgtagtacatgca
gatgaattggaggaacttattaactactatcaggatcgtggatattttgaagaactgata
accatgttggaagcagcactgggacttgagcgtgctcatatggggatgtttaccgaatta
gctattctgtattctaaatttaagccacagaaaatgagggagcacttggagctgttttgg
tccagagtgaatattcctaaggtgctaagagctgcagaacaagctcatctttgggcagaa
ttggtatttttgtatgacaagtatgaagaatatgataatgccataattaccatgatgaat
catccgaccgatgcatggaaagaagggcagttcaaagatatcattaccaaggttgccaat
gtggaactatactacagagcaatacagttctacttagaattcaagccgctgttgttaaat
gatttgctgatggtgctgtctccacggttggatcatactcgtgcagtcaattatttcagc
aaggttaaacagctgccactggtgaaaccgtatttgcgttcagtccaaaaccacaacaac
aaatctgtgaatgaatcactgaacaacctctttattacagaagaagattatcaggctcta
cgaacctcaatagatgcttatgacaactttgacaatatctcgcttgctcagcgtttggaa
aaacatgaactcattgagttcagaagaattgctgcttatctcttcaaaggcaacaatcgc
tggaaacagagtgtggagctgtgcaagaaagatagtctgtacaaggatgcaatgcagtat
gcctctgaatctaaagatactgaattggctgaagaactcctacagtggtttttgcaagaa
gaaaaaagggagtgctttggagcttgtctttttacctgttacgatcttctaaggcctgat
gttgtcctggaaactgcatggaggcacaatatcatggattttgccatgccctatttcatc
caggtcatgaaggaatacttgacaaaggtggataaattagacgcttcagaatcactgagg
aaagaagaagaacaagctacggagacacaacctattgtttacggtcagccccagttgatg
ctgacagcaggacccagtgttgcagtccctccccaggcaccttttggytatggttatact
gcaccaccctatgggcagccacagcctggctttgggtacagcatgtga
DBGET
integrated database retrieval system
