Sus scrofa (pig): 100462746
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Entry
100462746 CDS
T01009
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform 1
KO
K17890
autophagy-related protein 16-1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04136
Autophagy - other
ssc04140
Autophagy - animal
ssc04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100462746 (ATG16L1)
04136 Autophagy - other
100462746 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
100462746 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100462746 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
ssc03029
]
100462746 (ATG16L1)
Membrane trafficking [BR:
ssc04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
100462746 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
100462746 (ATG16L1)
Mitochondrial biogenesis [BR:
ssc03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
100462746 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
eIF2A
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_Vps41
DUF2332
Img2
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
100462746
NCBI-ProteinID:
NP_001177201
Ensembl:
ENSSSCG00000016300
UniProt:
D7RA19
LinkDB
All DBs
Position
15:133651294..133693472
Genome browser
AA seq
607 aa
AA seq
DB search
MSSSLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEK
HDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQR
DKEMQVNEAKIAECLQTISDLETECLELRTKLQDLERANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVLADDTSDHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSFSSVPAPQDDVDT
HPGSSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKG
SLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKHWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
IVREMELLGKITALDFNPERTELLSCSRDDLLKIIDLRINAVRQTFSVPGFKCGSDWTRV
VFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVASVDKGSK
AVLWSDY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgagcctccgcgccgcggtcttccctcggtggaagcgccacatctcggaggag
ctgaggcgccgggaccggctgcagaggcaggcgttcgaagagatcatcctgcagtataac
aagttgctggaaaagtccgatcttcattcagtgctggcccataagctacaagctgaaaag
catgacataccaaacaggcatgagataagtcccggacacgatggtgcgtggaatgacagt
cagctccaagaaatggcccagctgaggattaaacaccaagaggaactgactgagttgcac
aaaaaacgtggggagttagctcagctggtgattgacctgaataaccagatgcagcagagg
gacaaggagatgcaggtgaatgaagccaagattgcagaatgcctgcagaccatctctgac
ctggagaccgagtgcctggaactgcgcaccaagcttcaggaccttgagagagccaaccag
accctgaaggatgagtacgacgccctgcagatcacgttcactgccctggaggagaagctg
cggaagacgactgaggagaaccaggagctggtcaccagatggatggccgagaaagcccag
gaagccaaccgcctaaatgcagagaatgaaaaggattcgaggcggcggcaagcccggcta
cagaaggaactcgcagaagcagcaaaggaacccctgccagtcgaacaggatgatgacatt
gaagtccttgcagatgacacctccgatcaccctgaggagacctctcccgtgcgagccatc
agcagagcagccactaagcgactctcgcagcctgctggaggccttctggactctatcact
aatatctttgggaggcgctctttctcttccgttcctgctccccaggatgacgtggatacc
catccaggttccagtaaagaagtgagggtgccagtgaccgccgtgtgtgtctttgacgct
catgacggggaggtcaatgctgtgcagttcagtccgggctcccggctgctggccacagga
ggcatggatcggagggtgaagctctgggaggtgtttggagacaaatgtgagttcaaaggt
tccctctctggcagtaatgcaggaattacaagcattgaattcgatagtgccggatcttac
ctcttagcagcttcaaatgattttgcaagccgaatctggactgtggatgactatcggtta
cggcacacgctcacggggcacagcggcaaagtgctctctgccaagttcctgctggacaac
gcgcgtatcgtttctggaagtcatgaccggaccctcaaacactgggatctacgcagcaaa
gtctgcataaagacggtatttgcgggctccagctgcaatgacattgtctgcacagagcag
tgtgtaatgagtggacacttcgacaagaaaattcgtttctgggacatccgttcagaaagc
atcgtccgagagatggagctcttgggaaagattactgccctggactttaacccagaaaga
accgaactcctcagctgctctcgtgatgacctgctaaaaattattgaccttcgaattaat
gccgtcaggcagacgttcagtgtacctggcttcaagtgcggctccgattggacgagggtc
gtgttcagccctgatggcagttacgtggcagcgggctcggccgagggctctctctacgtc
tggagtgtgctctccgggaaggtggagaaggtcctttcaaagcatcacagctcgcccatc
aacgcagtggcctggtccccctccggcgcccacgtcgccagtgtggacaaaggaagcaaa
gctgtgctgtggtccgactactga
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integrated database retrieval system
