Sus scrofa (pig): 100511271
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Entry
100511271 CDS
T01009
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X2
KO
K10754
replication factor C subunit 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03030
DNA replication
ssc03410
Base excision repair
ssc03420
Nucleotide excision repair
ssc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100511271 (RFC1)
03410 Base excision repair
100511271 (RFC1)
03420 Nucleotide excision repair
100511271 (RFC1)
03430 Mismatch repair
100511271 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssc03032
]
100511271 (RFC1)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100511271 (RFC1)
DNA replication proteins [BR:
ssc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100511271 (RFC1)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100511271 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_14
Rad17
AAA_5
BRCT_2
RuvB_N
AAA_7
AAA_17
AAA_33
AAA_30
AAA_16
AAA_18
Zeta_toxin
nSTAND3
RNA_helicase
AAA_19
NTPase_1
SKI
NPHP3_N
TIP49
AAA_28
Motif
Other DBs
NCBI-GeneID:
100511271
NCBI-ProteinID:
XP_005666645
Ensembl:
ENSSSCG00000008788
LinkDB
All DBs
Position
8:complement(30552369..30635932)
Genome browser
AA seq
1141 aa
AA seq
DB search
MDIRKFFGVVPSGKKLVSETVKKNEKSKSAEETLKTKKGIKEIKVNSSCKDDDFQQKQPS
KKKRIIYDSDSESEETVQVKNTRKRPEKLPLSSKPAKIRHQDPVTYISETDEEDDFVCKK
AASKSKENGGSTNNYLGASNMKKNEENTKAKNKPLSPIKLTPTSVLDYFGTGSVQRSDKK
MVASRKKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKAKK
ALKDLEERETFSSLQASLCKAEKPKYPHKERFSDERKNYSPKKQKCESSKESQPHSRSSA
HKIRETSSPKASSKLALLKRKEESSNNKTEPMGSKRKEDAIELKETRTPKKIKGSPAKKE
SISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSGKAAALGTKIIDEDGLLNLIRTMPGK
KSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKVSPTKKESESKKCKQTPKRESSINSIKK
ETSVFRKGLDFKEQVAEETDGDSRARNLADDSSENKVENLLWVDKYKPASLKTIIGQQGD
QSCANKLLRWLQNWHKSPSEDKKRAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLV
CQELGYSYVELNASDTRSKNSLKEIIAESLNNTSIKGFYSSGAAHSVSTKHALIMDEVDG
MAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAM
MSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDI
KLGPFDVARKVFVTGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKH
LMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLG
KHSSAGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVQPLTSQGVEGVQDAVAL
MDTYYLMKEDFENIMEISSWGGRPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAVKTHR
HSTGPVLDSEYNEELNEDDSQSDEKDQDTLESDAMIKKKPKPSKSEKDKESRKGKGKSSK
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggaaattctttggggttgtaccaagtggaaagaaacttgtaagtgaaaca
gtaaagaagaatgagaaatcaaagtctgctgaagaaactttaaaaacaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaggacgatgacttccaacagaagcaaccaagc
aagaaaaagagaatcatctatgattcagattcagaatcagaggagacagtgcaggtgaaa
aacaccagaaagcgaccagaaaaattgccactgtcttctaaacctgctaaaattcgacac
caggatcctgttacatacatttcagaaacagatgaagaagatgactttgtgtgtaagaag
gcagcctctaaatctaaagagaatggaggatctacaaataattatcttggagcatcaaac
atgaaaaagaatgaagaaaacactaaggccaagaataagccattgtcaccaataaaactt
acccccacgtcagtgcttgattattttggaactggaagtgttcaaagatcagataagaag
atggttgccagcagaaaaaaagaaccttcccaaaatgcagatgattccagattaaatgac
gaagccattgccaagcagttacaacttgatgaagatgcagagctggagagacagctgcat
gaggatgaagagtttgccagaacattagccatgttggatgaagaacccaaggccaaaaag
gctctaaaggacctggaagagagagagacattttcatctctacaagctagtttatgtaaa
gcagaaaaacctaaatatcctcataaagagcgattttcagatgaaagaaagaactacagt
cctaagaagcaaaaatgtgaaagttcaaaagaatctcagccacattccaggtcatcagct
cataaaataagagaaacttcttctccaaaagccagttccaagctggcacttttgaaaaga
aaagaagagagttctaataacaaaacagagccgatgggctccaaaaggaaagaagatgcc
attgaattaaaagagaccagaactcctaagaaaatcaaaggttctccagctaaaaaagag
tccataagtcccgaagattctgaaaagagacgtactaattatcaggcttatcgaagctac
ttaaatcgagaaggtcccaaagctctgggctccaaagaaataccaaagggagctgaaaat
tgcttggaaggccttacgtttgtaatcacaggagtgctggagtccattgaaagagatgag
gccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtcagcaagaaaaca
aactaccttgtcatgggtcgtgatagcggtcagtccaagagcggtaaggcagcagccttg
ggaacaaaaattattgatgaggatggcctattgaatctgattcgaactatgccaggcaag
aagtccaagtatgaaatagcagttgaggctgagatgaagaaagaaaaatccaaattggaa
agaacaccccaaaaaaaggatcaaggaaaaagaaaagttagtccaactaagaaggaatca
gaatctaaaaagtgcaaacagactcccaaaagggaaagctctataaattcaataaaaaag
gaaaccagtgtgtttcggaaaggcctggacttcaaggagcaggtggctgaggagacagat
ggtgacagccgggctaggaatttggctgatgacagcagtgaaaacaaagtggaaaatttg
ctctgggtggataaatataagccagcctcgctcaagaccataattggacagcaaggtgac
cagagctgtgccaacaaactcctacgctggctccaaaactggcacaagagtccatccgaa
gataagaaacgcgcagcaaaatttggtaaatttgctggcaaagatgatggctccagtttt
aaagctgcattgctctcaggccctccaggtgttggcaaaaccaccacagcttctctggtt
tgtcaggaattgggatatagctatgtggaactgaatgcaagtgacactcggagtaagaac
agtttgaaggagattattgctgagtcgctgaataataccagcatcaaaggcttttattca
agtggagcagcccattcagtaagcacgaaacatgctctcatcatggatgaagtagatggc
atggcaggcaatgaggacaggggaggaattcaggaattaattggtttgataaaacataca
aaaattcccattatttgtatgtgcaatgatagaaatcaccccaagattcgctccttggtt
cattattgtttcgatcttcgttttcaaagacctcgggttgaacagattaagggtgctatg
atgtctattgcatttaaagagggtttaaaaatcccccctccagctatgaatgaaataatt
ttgggagccaatcaagatattagacaggttttacataatctgagtatgtggtgtgcacga
agtaaggcactaacctatgaccaggctaaggctgattctcacagagccaaaaaggatatc
aaactgggcccatttgatgttgcccgaaaggtgtttgtaactggagaggagactgctcat
atgtcacttatggacaagtcggatctctttttccatgattattcaatagcaccgctcttt
gtccaggagaactacattcacgtgaagcctgtagctgcaggaggtgacatgaaaaagcac
ctgatgcttttaagcagagcagcagacagcatttgtgatggtgacctagtggaccgtcag
atccgcaataagcaaaactggagccttctgcccacacaggccatttatgccagtgttctt
cccggagagttaatgagggggtacatgacccagtttccctccttcccaagctggttgggg
aagcactcatctgcgggcaaacacgatcgtattgttcaggacctagcattgcatatgagt
ctcagaacttactccagcaaaaggactgtaaacatggattatctgtcacatataagggat
gcacttgtacagcccttgacctcacaaggggtggaaggagtacaagatgctgttgctctt
atggacacatattatttgatgaaagaagactttgagaatattatggaaattagcagctgg
ggaggcagacctagtcctttctccaagctggatcccaaggtgaaagcagccttcacaaga
gcttacaataaggaagcccaccttactccgtattcactgcaggcagtaaagacacacaga
cacagcacaggtccagtgctggattctgaatacaacgaagagttaaatgaagatgactct
caatctgatgagaaagaccaggacactttagaaagtgatgctatgatcaagaaaaagccg
aaaccttcaaaatcagaaaaagataaggagtccagaaaaggaaaagggaaaagttcaaag
aaatga
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integrated database retrieval system
