Sus scrofa (pig): 100511290
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Entry
100511290 CDS
T01009
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04140
Autophagy - animal
ssc04148
Efferocytosis
ssc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100511290 (VPS16)
04148 Efferocytosis
100511290 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100511290 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100511290 (VPS16)
Membrane trafficking [BR:
ssc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100511290 (VPS16)
Hops complex
100511290 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
FliO
Motif
Other DBs
NCBI-GeneID:
100511290
NCBI-ProteinID:
XP_003134376
Ensembl:
ENSSSCG00000007167
UniProt:
A0A4X1SGW4
A0A480V3F0
LinkDB
All DBs
Position
17:complement(32803596..32825974)
Genome browser
AA seq
839 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA
SVRPVLEIYSASGMPLASLMWKSGPVVSLGWSAEEELLCVQEDGVVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTELGSGVAILTGAHRFTLSANVSDLKLRRMPEVPGLQSAPSCW
TTLCRDRVAHILLAVGPDLYLLDHATCSPVTLPGLAPGVSSFLQMAVSFTSRHLALFTDT
GYIWMGTASFKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDTPESIQ
FVLDEDSYLVPELDGVRIFSRTTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLPQAVQQCIEAAGHEHWPDMQKSLLRAASFGKCFLDRFPPDSFVR
MCQDLRILNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYTAEEHIEGRVAALQKAAEAFNK
AKNDFAAKATEDQMRLLRLQRCLEDELGGRFLDLSVHDTVTTLILGGHNKRAEQVARDFR
IPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNEAEMSLVLSHCTGATDGATVDKIQRARAQAQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacaccgcgaactggaacccgctcggggactctgccttttaccggaaatat
gagctgtatagcatggactgggacctgaaggaagaactcagggactgcctggtggccgct
gcaccctatgggggccccattgcactgctgaggaacccctggcggaaggagaaggctgcc
agcgtgcggccggtgctcgagatctactcggcttccggcatgcctctggccagtctgatg
tggaagagcgggcccgtggtgtccctgggctggtcggctgaggaggagctgctctgcgtg
caggaggacggcgtcgtgctggtgtacgggcttcacggtgacttccggagacacttcagc
atgggcaacgaggtgctccagaaccgggttctagatgcccgcatcttccataccgagctt
ggttctggggtggccatcctcacaggggcccaccgcttcaccctcagcgccaacgtgagc
gacctcaaactccgccggatgccagaggtgccaggtctgcagagtgcaccctcgtgctgg
accacgctgtgccgggaccgagtggcacacattcttctggccgtgggacctgatctttac
ctcctggaccacgcgacctgctccccagtgacactccccggcctggccccaggagtgagc
agcttcctgcagatggctgtctccttcaccagccggcatctggcgctcttcacagacaca
ggctacatctggatgggcacggcatccttcaaggagaagctgtgtgagttcaactgcaac
atccgggcccccccgaaacagatggtctggtgcagccgtcctcgcagcaaggagagggct
gttgtggtggcctgggagaggcggctcatggtggtgggtgacacacctgagagcatccag
tttgtgctggacgaggactcctacctggtgcctgagctggatggagtccgcatcttctcc
cgcaccacccacgagttcttgcacgaggttccagtggccagtgaggagatctttaaaatc
gcctcgatggcccccggagcgctgctgctggaggcccagaaggagtatgagaaagagagc
cagaaggcggatgagtacctgcgggagatccaggagctggggcagctgccccaggctgtg
cagcagtgcatcgaggctgcaggacatgagcactggccagacatgcagaagagtctgctc
agggcggcctccttcggaaagtgtttcctggacaggtttccacccgacagcttcgtgcgc
atgtgtcaggatcttcgtatactcaatgccatccgggactatcacatcgggatccccctt
acctatagccaatacaagcaactcaccatccaggtgctgctggacaggcttgtattgcgg
aggctttaccccctggccattcagatctgtgagtacctgcggcttcctgaggtgcagggc
gtcagcaggatcctggcccactgggcctgctacaaggtacaacagaaggatgtgtctgat
gaggatgttgctcgggccattaaccaaaagctgggagacacgcctggcgtctcttactct
gacattgctgcacgagcctatggctgtggccgcacggagctggctatcaagctgctggag
tatgagccacgctctggggagcaggtaccccttctcctaaagatgaagaggagcaaactg
gcactaagcaaggccatcgagagcggggacactgacctggtgttcacggtgctgctgcac
ctgaagaatgagctgaaccgaggagactttttcatgacacttaggaatcagcccatggcc
ctgagtttataccgacagttctgtaaacatcaggagttggagacgctgaaggacctttat
aaccaggatgacaaccaccaggagctgggcagcttccacatccgagccagctacacggca
gaggagcatatcgaggggcgagttgcagctctgcagaaggcagccgaagccttcaacaag
gccaagaacgactttgcagccaaggccacagaggatcaaatgcggctcctgcgactgcag
cgatgtctagaagacgagctagggggccggttcttagacctgtctgtacacgacacagtc
accaccctcatccttggtggccacaacaagcgtgcagagcaggtggcacgtgacttccgc
atccctgacaagaggctctggtggctgaagctaaccgccctggcagatctggaagactgg
gaggagctagagaaattttctaagagcaagaaatcccccatcggctacctgccctttgtg
gaaatctgcatgaagcaacacaacaaatatgaggccaagaagtatgcctcccgcgtgggt
cctgagcagaaggtcaaggccttgcttctagttggggatgtggctcaggctgcagacgtg
gccatcgagcaccggaacgaggcagagatgagcctcgtgttgtcccactgcaccggagcc
acagacggggccacggtggacaagattcagcgggcccgggcacaagcccaaaagaagtga
DBGET
integrated database retrieval system
