Sus scrofa (pig): 100512118
Help
Entry
100512118 CDS
T01009
Symbol
NUP54
Name
(RefSeq) nucleoporin p54 isoform X2
KO
K14308
nuclear pore complex protein Nup54
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100512118 (NUP54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100512118 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100512118 (NUP54)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100512118 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
100512118
NCBI-ProteinID:
XP_003129166
Ensembl:
ENSSSCG00000008979
UniProt:
A0A8D0VFC3
A0A286ZTU0
LinkDB
All DBs
Position
8:complement(71792153..71833180)
Genome browser
AA seq
510 aa
AA seq
DB search
MAFNFAAPSGSSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPANTGTTGLFGSTQNKG
FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQQQQTTLGGLFSQPTQAPTQSNQL
INTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVG
YSCMPNNKDEDGLVVLVFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQ
TEVVIYVVERSPNGTSRRVPATTLYAHFEQTIIKTQLQQLGVTLSMTRTELSPAQIKQLL
QNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISED
ISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTI
QCELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHL
ISIIKDDLEDIKLVEHGLNETLHIRSGVFS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaactttgcggctccctcgggcagctcaggtaccgctgcagccaccgcagcc
cccgcgggtgggtttggaggatttgggacaacatctacaacagcaggctctgcattcagc
ttttcagctccagctaacactggcactactggactctttggtagtactcagaacaaaggt
tttggatttggtactggttttggcacaacaactggaactagtactggtttaggtactggt
ttgggaactggacttggatttggaggatttaatacacagcagcagcagcaacaacaacaa
actacattaggtggtctcttcagtcagcctacacaagctcctacccagtccaatcaactg
ataaatactgcaagtgctctttctgctccaacactactgggagatgagagagatgctatt
ttggcgaaatggaatcaactacaggccttttggggaacaggaaaaggatatttcaacaat
aacattccaccagtggaattcacgcaagaaaatcctttttgccgatttaaggcagtaggt
tacagttgtatgcccaataataaagacgaagatggcctagtggttttagttttcaacaaa
aaggaaacggatattcgaagccagcaacagcagttggtagaatcattacataaagttttg
ggaggaaaccagacccttactgtaaatgtagagggaattaaaacattaccagatgatcag
acagaagttgtcatttatgttgttgagcgttctccaaatggtacctcaagaagagttcca
gctacaacactctatgcccattttgaacaaaccattataaaaacacaactgcagcagctt
ggtgtaaccctttctatgactagaacagaactttctcctgcacagatcaaacagctttta
cagaatcctcctgctggtgtcgatcctattatctgggaacaagccaaggtggacaaccct
gattctgaaaagttaattcctgtaccaatggtgggttttaaggaacttcttcgaagactg
aaggtccaagatcagatgactaagcagcatcaaaccagattagatatcatatctgaagat
attagtgaattacagaagaatcaaactacaactatggccaaaattgcacagtacaagagg
aaactcatggatctttcccacagaaccttacaggtcctaatcaaacaggaaattcagagg
aagagtggatatgccatccaagctgatgaagagcagttgcgagttcagctagatacaatt
cagtgtgaactaaatgcccccactcagtttaagggccgactcaatgaactgatgtcccaa
atcaggatgcagaatcattttggagcagtcagatctgaagaaagatattatatagatgca
gatctgttgcgagaaatcaagcagcatttgaaacaacaacaggaaggccttagccacttg
attagcatcataaaagatgacctagaagatatcaagttggtagaacacggattgaatgaa
accctccacatcagaagtggtgtcttcagttga
DBGET
integrated database retrieval system
